Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n12
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0391 - 20287755-20288084,20288174-20288414,20288519-202888...    29   4.5  
08_01_0774 + 7482311-7482919,7484012-7484077,7484211-7484384,748...    28   7.9  
02_05_1332 + 35758657-35758728,35758959-35760689                       28   7.9  

>06_03_0391 -
           20287755-20288084,20288174-20288414,20288519-20288844,
           20288954-20289097,20289260-20289380,20289645-20289733,
           20289821-20289891,20290165-20290309,20290390-20290479,
           20290991-20291239
          Length = 601

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +2

Query: 404 SVVWKNIEMASGPNSPVQTEQDIEDIFGDSLKTWDHFTDDAKK----NTFHDAISETQRE 571
           SVV K + M++ P+ PVQ E D + +       W+     A+K       H    E   E
Sbjct: 109 SVVTKLLLMSNFPSLPVQNESDSDSV---KFSLWEEPYKQARKWKPCAAKHSLPDEVPEE 165

Query: 572 NNEDFHL 592
           NN  F L
Sbjct: 166 NNNGFIL 172


>08_01_0774 +
           7482311-7482919,7484012-7484077,7484211-7484384,
           7484473-7484603,7484726-7484802,7484981-7485064,
           7487885-7488066,7488189-7488266,7489813-7489945,
           7491610-7491670,7491861-7491942,7492143-7492271,
           7492510-7492653,7493102-7493204,7493382-7493513,
           7494127-7494485,7495149-7495229,7495384-7495450,
           7495636-7495706,7496087-7496178,7496365-7496458,
           7497692-7497789,7498206-7498341,7498599-7498618,
           7498781-7498876,7498973-7499060,7499171-7499288,
           7499738-7499759,7500203-7500326,7500625-7500702,
           7500837-7500955,7501816-7501869,7502260-7502362,
           7503133-7503261,7503345-7503453,7503788-7503819
          Length = 1424

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 683 AQDSQNGSRRRWRPCVLLRGIDVS 612
           ++D+  GSRRR R C  + G DV+
Sbjct: 759 SRDASRGSRRRQRSCSTMAGCDVA 782


>02_05_1332 + 35758657-35758728,35758959-35760689
          Length = 600

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = +2

Query: 392 NHGDSVVWKNIEMASGPNSPVQTEQDIEDIFGDSLKTWDHF----TDDAKKNTFHDAISE 559
           N  D +V  N E  +G  +  Q E D+  ++GDSL   D       DDA +        E
Sbjct: 500 NIEDDIVGMNTE-GNGEEA-FQPEDDV--VYGDSLSPADDIAAEAADDASRELEEQQDVE 555

Query: 560 TQRENNEDF-HLNATELLKKHQYPVEEHTVATDDGY 664
           T  E + +   +NA E     +Y  E+  +  DD +
Sbjct: 556 TAEEYDYEMDDVNAAEENDYQEYEDEDDDLEDDDDF 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,883,508
Number of Sequences: 37544
Number of extensions: 285922
Number of successful extensions: 678
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)