Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n10
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132847-5|CAB60384.2| 280|Caenorhabditis elegans Hypothetical ... 179 2e-45
AL110500-23|CAB63414.1| 280|Caenorhabditis elegans Hypothetical... 179 2e-45
Z49131-5|CAA88978.1| 217|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81592-5|CAB04727.1| 434|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z36752-1|CAA85323.2| 150|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical ... 28 5.9
AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical ... 28 5.9
AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix metall... 28 5.9
>AL132847-5|CAB60384.2| 280|Caenorhabditis elegans Hypothetical
protein Y48G10A.1 protein.
Length = 280
Score = 179 bits (436), Expect = 2e-45
Identities = 87/178 (48%), Positives = 115/178 (64%)
Frame = +2
Query: 179 LESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFI 358
L SSN+ F G Q VY HASS +C+M F +Y+P D KLP L+YLSGLTC+ NF+
Sbjct: 5 LVSSNRSFKGRQFVYKHASSTTQCEMTFGVYIPDHKP--DEKLPALFYLSGLTCTHANFM 62
Query: 359 TKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGS 538
KSGFQ++A++H ++VV PDTSPRGV +DGD SWDFG AGFY++AT E W NYRM
Sbjct: 63 EKSGFQQFASKHRLVVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKNYRMYD 122
Query: 539 YLNVELYDLILKAFCNVVDPNRXXXXXXXXXXXXALVSTLRNPGQYKSVSAFAAICNP 712
Y+ EL + ++ + +D + AL LRN +++S+SAFA ICNP
Sbjct: 123 YIVKELLEEVVPSVA-PIDLAKIGIFGHSMGGHGALTIGLRNSSKFQSISAFAPICNP 179
>AL110500-23|CAB63414.1| 280|Caenorhabditis elegans Hypothetical
protein Y48G10A.1 protein.
Length = 280
Score = 179 bits (436), Expect = 2e-45
Identities = 87/178 (48%), Positives = 115/178 (64%)
Frame = +2
Query: 179 LESSNKIFGGYQKVYSHASSELKCKMNFSIYLPPQAEGGDVKLPLLYYLSGLTCSEQNFI 358
L SSN+ F G Q VY HASS +C+M F +Y+P D KLP L+YLSGLTC+ NF+
Sbjct: 5 LVSSNRSFKGRQFVYKHASSTTQCEMTFGVYIPDHKP--DEKLPALFYLSGLTCTHANFM 62
Query: 359 TKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGS 538
KSGFQ++A++H ++VV PDTSPRGV +DGD SWDFG AGFY++AT E W NYRM
Sbjct: 63 EKSGFQQFASKHRLVVVHPDTSPRGVDVDGDSESWDFGKGAGFYVNATVEKWAKNYRMYD 122
Query: 539 YLNVELYDLILKAFCNVVDPNRXXXXXXXXXXXXALVSTLRNPGQYKSVSAFAAICNP 712
Y+ EL + ++ + +D + AL LRN +++S+SAFA ICNP
Sbjct: 123 YIVKELLEEVVPSVA-PIDLAKIGIFGHSMGGHGALTIGLRNSSKFQSISAFAPICNP 179
>Z49131-5|CAA88978.1| 217|Caenorhabditis elegans Hypothetical
protein ZC373.6 protein.
Length = 217
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +2
Query: 428 RGVKIDGDDSSWDFGVSAGFYLDATNEPWNNNYRMGSYLNVELYDLILKAFCNVVDPNR 604
+G+ I G + +S G+ +T +P+N N+ V++ D + F V+ P R
Sbjct: 159 QGLDIHGGSGGYHRALSGGYLPPSTYDPYNVNWHSYGDEGVKMKDKAISVFRRVIAPGR 217
>Z46812-5|CAA86847.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 11 PALIFKDTIHNSFDRNVDTIVSTREQYIHVVPRTIESL 124
P + ++ NSFD V+ + T+E H+ R +E+L
Sbjct: 63 PFMPLREIFENSFDTEVEMVTHTKETTEHLKDRVVEAL 100
>Z37093-7|CAA85468.2| 775|Caenorhabditis elegans Hypothetical
protein ZK669.1a protein.
Length = 775
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 11 PALIFKDTIHNSFDRNVDTIVSTREQYIHVVPRTIESL 124
P + ++ NSFD V+ + T+E H+ R +E+L
Sbjct: 63 PFMPLREIFENSFDTEVEMVTHTKETTEHLKDRVVEAL 100
>Z81592-5|CAB04727.1| 434|Caenorhabditis elegans Hypothetical
protein T16G1.5 protein.
Length = 434
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 165 WTACN*NRPIKFLVVIKKCILMHHL 239
WT N N P K ++ + CI +HHL
Sbjct: 65 WTIPNENLPEKIILKLTSCINVHHL 89
>Z36752-1|CAA85323.2| 150|Caenorhabditis elegans Hypothetical
protein F35H8.1 protein.
Length = 150
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/77 (29%), Positives = 34/77 (44%)
Frame = +2
Query: 320 YLSGLTCSEQNFITKSGFQRYAAEHGVIVVGPDTSPRGVKIDGDDSSWDFGVSAGFYLDA 499
YLS L C FI G +R A E +++ + + + +D ++ F VS F D
Sbjct: 3 YLSNLLCLTLTFIVCFGAERDADEEAYVLM--NLLKQSIDMDQTEALPGF-VSRDFTYDT 59
Query: 500 TNEPWNNNYRMGSYLNV 550
WN + M YL V
Sbjct: 60 CKGIWNRDKYM-EYLKV 75
>AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical
protein H19M22.3c protein.
Length = 453
Score = 28.3 bits (60), Expect = 5.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 527 CNYYSMVHLWRLNKNRH 477
CN+ + +H+WR N N H
Sbjct: 373 CNFLAGLHMWRTNPNHH 389
>AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical
protein H19M22.3a protein.
Length = 519
Score = 28.3 bits (60), Expect = 5.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 527 CNYYSMVHLWRLNKNRH 477
CN+ + +H+WR N N H
Sbjct: 439 CNFLAGLHMWRTNPNHH 455
>AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 394
Score = 28.3 bits (60), Expect = 5.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 527 CNYYSMVHLWRLNKNRH 477
CN+ + +H+WR N N H
Sbjct: 314 CNFLAGLHMWRTNPNHH 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,194
Number of Sequences: 27780
Number of extensions: 390395
Number of successful extensions: 854
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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