Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n08
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   224   9e-60
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   224   9e-60
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           27   2.7  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    26   4.7  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  224 bits (548), Expect = 9e-60
 Identities = 103/198 (52%), Positives = 134/198 (67%)
 Frame = +2

Query: 71  FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 250
           F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTC
Sbjct: 3   FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTC 62

Query: 251 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 430
           Q+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                    
Sbjct: 63  QIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGV 122

Query: 431 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 610
                     E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG
Sbjct: 123 TEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPG 182

Query: 611 YDAESKKFNAEVHRAHIF 664
           +D E+++ + E  R +I+
Sbjct: 183 FDIETEELDDETLRKYIY 200



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 663 FGLHVAEYMRSLEQDDE 713
           +G HVAEYM  L  DDE
Sbjct: 200 YGGHVAEYMEMLIDDDE 216


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  224 bits (548), Expect = 9e-60
 Identities = 103/198 (52%), Positives = 134/198 (67%)
 Frame = +2

Query: 71  FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 250
           F+K VK+  YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTC
Sbjct: 3   FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTC 62

Query: 251 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 430
           Q+  SR+ GD+++  A+S ELPRYG+K GL N+ AAY+TG                    
Sbjct: 63  QIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGV 122

Query: 431 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 610
                     E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG
Sbjct: 123 TEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPG 182

Query: 611 YDAESKKFNAEVHRAHIF 664
           +D E+++ + E  R +I+
Sbjct: 183 FDIETEELDDETLRKYIY 200



 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 663 FGLHVAEYMRSLEQDDE 713
           +G HVAEYM  L  DDE
Sbjct: 200 YGGHVAEYMEMLIDDDE 216


>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 395 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 303
           EAV + + D  + L  +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 597 KDSLAMMQNPKSSMLKYTGLTSF 665
           KDSL MM    SS+L   GLT+F
Sbjct: 788 KDSLGMMHFLTSSLLNEQGLTAF 810


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,714
Number of Sequences: 5004
Number of extensions: 60204
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)