Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n08
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...   261   3e-70
Z81069-4|CAB02991.1|  370|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical ...    31   0.62 
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    30   1.9  
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z69902-3|CAA93768.1|  305|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score =  261 bits (640), Expect = 3e-70
 Identities = 123/199 (61%), Positives = 145/199 (72%)
 Frame = +2

Query: 65  LGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 244
           +G VKV+KNK YFKRYQVK +RRREGKTDYYARKRL VQDKNKYNTPKYRLIVR++NKDV
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDV 60

Query: 245 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 424
             Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAAAY+TG                  
Sbjct: 61  VAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYK 120

Query: 425 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRF 604
                   +YNVE  +     F+  LD+GLARTTTG+++F  MKG  DGG+NVPHS  RF
Sbjct: 121 GHEELTGEDYNVEE-EGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRF 179

Query: 605 PGYDAESKKFNAEVHRAHI 661
            G+D ESK++NAE HR  I
Sbjct: 180 FGFDQESKEYNAEAHRDRI 198


>Z81069-4|CAB02991.1|  370|Caenorhabditis elegans Hypothetical
           protein F25H9.4 protein.
          Length = 370

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -2

Query: 712 SSSCSRLLMYSATCKPKDVSPVYFSIELFGFCIIARESFDGMRN-IEATVNSTLHSSKDT 536
           + S  R +     C P + SP +     FGF II   S+   RN I    N T  S++ +
Sbjct: 89  AKSQKRRVSIYLVCNPNNSSPDWSVTTSFGFRII--NSWGKSRNKISTLFNHTFTSNETS 146

Query: 535 STSSGAC*AYIQITSKCSWSIVD-RFNIVF 449
             +SG C  + ++T+  S  +V+ RF I F
Sbjct: 147 KGTSGYC-TWDELTAANSGFLVEGRFQIEF 175


>AF067610-1|AAC17538.2|  696|Caenorhabditis elegans Hypothetical
           protein F41A4.1 protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 455 NVEPVDNGPGAFRCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 631
           N EP++   G F C+L       TT+G+R  G      +  L    + ++FPG    +  
Sbjct: 68  NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127

Query: 632 F 634
           F
Sbjct: 128 F 128


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 299  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 186
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 299  KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 186
            +QR     ++ + + P   HLC R+++  DI  CYI CS
Sbjct: 980  RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018


>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
           protein K10G4.5 protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 194 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 313
           YN P+YR +++L  K   C+     + GD++   +CA +  EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588


>Z69902-3|CAA93768.1|  305|Caenorhabditis elegans Hypothetical
           protein C47D12.4 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 114 WYLLKYCLFFTTLTNPRNSNLTVY 43
           +Y  K C F TT  N + S+LT+Y
Sbjct: 262 FYRFKNCEFLTTCNNGKESHLTIY 285


>Z93390-6|CAB07675.4|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 341 SDQPSHHNVATHVNKQRTQYGHLQSESRP 255
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z93390-1|CAE46674.1|  540|Caenorhabditis elegans Hypothetical
           protein T23B5.3b protein.
          Length = 540

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 341 SDQPSHHNVATHVNKQRTQYGHLQSESRP 255
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


>Z80214-7|CAC42261.2|  816|Caenorhabditis elegans Hypothetical
           protein T23B5.3a protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 341 SDQPSHHNVATHVNKQRTQYGHLQSESRP 255
           SD P HH   +H + Q  Q  HLQ    P
Sbjct: 17  SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,297
Number of Sequences: 27780
Number of extensions: 348300
Number of successful extensions: 927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)