Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n08
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 228 2e-60
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 227 4e-60
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 30 1.3
At2g28780.1 68415.m03499 expressed protein 29 2.3
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 28 5.3
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 28 5.3
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 27 9.3
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 228 bits (558), Expect = 2e-60
Identities = 108/198 (54%), Positives = 137/198 (69%)
Frame = +2
Query: 71 FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 250
FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 3 FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62
Query: 251 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 430
Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAY TG
Sbjct: 63 QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122
Query: 431 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 610
+++VEP D+ FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G
Sbjct: 123 VEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181
Query: 611 YDAESKKFNAEVHRAHIF 664
+ E+K+ +AE+HR +I+
Sbjct: 182 FHKENKQLDAEIHRNYIY 199
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 227 bits (556), Expect = 4e-60
Identities = 108/198 (54%), Positives = 137/198 (69%)
Frame = +2
Query: 71 FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 250
FVK K+ YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 3 FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62
Query: 251 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXX 430
Q+ + I GD + +AY+HELP+YG+ VGLTNYAAAY TG
Sbjct: 63 QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122
Query: 431 XXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPG 610
+++VEP D+ FR LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G
Sbjct: 123 VEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181
Query: 611 YDAESKKFNAEVHRAHIF 664
+ E+K+ +AE+HR +I+
Sbjct: 182 FHKENKQLDAEIHRNYIY 199
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +2
Query: 50 VKFEFLGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPK 208
VKFE + F + KQ + QV+ ++R+E K + RKR+ D + N PK
Sbjct: 491 VKFEEIKFKDKYREKQRQQNLQVRKEKRQEEKKEKGKRKRV---DASASNDPK 540
>At2g28780.1 68415.m03499 expressed protein
Length = 796
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 533 ARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFWFA 673
A +FGA D + S K+ + E KKF AE H FWF+
Sbjct: 556 ASLFGAKASKAD----IMESQKKLRSHLNELKKFTAEAHAEPSFWFS 598
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 83 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 256
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +2
Query: 83 VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 256
VKN + + ++ KR+ EGKT+ +K++ +D+ + P + +SN + + ++
Sbjct: 79 VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 27.5 bits (58), Expect = 9.3
Identities = 25/65 (38%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 712 SSSCSRLLMYSATCKPKDVSPVYFSIELFGFC---IIARES---FDGMRNIEATVNSTLH 551
SSS SR + + T K D P F L FC I ES DG R + + S H
Sbjct: 1535 SSSSSRTPLSTTTSKKVD--PSDFEKRLVNFCKHQIETDESPFFGDGFRKVNKMMASNNH 1592
Query: 550 SSKDT 536
S KDT
Sbjct: 1593 SLKDT 1597
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,064,328
Number of Sequences: 28952
Number of extensions: 310496
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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