Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n07
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.7  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.3  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.3  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 312  LQTKKMSIHIAWSLGLYT 365
            LQ  K  IH+ W LG+ T
Sbjct: 1286 LQLNKDQIHVKWPLGVRT 1303


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 312  LQTKKMSIHIAWSLGLYT 365
            LQ  K  IH+ W LG+ T
Sbjct: 1286 LQLNKDQIHVKWPLGVRT 1303


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 265 PLFVSGGDDYKIKVWN 312
           PLF  GGD+  +  WN
Sbjct: 358 PLFHMGGDEVHLGCWN 373


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 189 IIPKLNHTIVQTSQHPWSLSMKRYAFHPRRL 97
           ++  L H +V   Q P     +++ +HP+ L
Sbjct: 93  VLLSLKHAVVHPGQSPAEKYDQQHLYHPQVL 123


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 165 WCDSTLGL 188
           WCD T+GL
Sbjct: 19  WCDQTIGL 26


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 275 TKRGC*IWKQIP 240
           T++ C +WK+IP
Sbjct: 225 TRKVCGVWKRIP 236


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 330 TSSLFVVPDLNLVVISARHEKRLLNMEAN 244
           TSSL   P  +   ++ +HE    N  AN
Sbjct: 261 TSSLITTPSPSASPLAYQHEYNSFNWTAN 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,219
Number of Sequences: 336
Number of extensions: 3965
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)