Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n06
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 92 3e-19
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 90 2e-18
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 90 2e-18
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 85 4e-17
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 84 1e-16
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 84 1e-16
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 83 1e-16
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 83 2e-16
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 81 5e-16
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 81 5e-16
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 79 2e-15
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 79 2e-15
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 77 2e-14
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 75 4e-14
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 74 8e-14
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 74 8e-14
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 72 3e-13
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 71 8e-13
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 70 1e-12
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 70 1e-12
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 70 1e-12
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 69 4e-12
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 67 9e-12
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 67 9e-12
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 63 2e-10
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 63 2e-10
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 62 3e-10
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 55 5e-08
At3g55950.1 68416.m06217 protein kinase family protein contains ... 32 0.43
At4g34090.2 68417.m04836 expressed protein 30 1.3
At4g34090.1 68417.m04837 expressed protein 30 1.3
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 29 3.0
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ... 29 3.0
At3g63510.1 68416.m07154 nitrogen regulation family protein cont... 29 4.0
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 28 7.0
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 92.3 bits (219), Expect = 3e-19
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Frame = +3
Query: 318 DHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIA 497
++++ +A G FH+L L G L + GNN+ GQLG ++ +P V+ D T+ IA
Sbjct: 196 ENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLG-TGDTQPTSHPVPVQGLDDLTLVDIA 254
Query: 498 CGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAYHS 674
G HS A+ + G+ + WG G+LG + ++ P+ V LA +++IQV+CG HS
Sbjct: 255 AGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHS 314
Query: 675 VALTNSGDLYSW 710
VALT G ++S+
Sbjct: 315 VALTRDGRIFSF 326
Score = 74.9 bits (176), Expect = 5e-14
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
+++V +G +SL + + G +++ G N G LG Q E+ P+ V+ + I+ A G
Sbjct: 40 VRSVVSGSRNSLAICDDGTMFTWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIG 99
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLG-----NNLGAHAQDKPKFVKGLATK-NVIQVACGA 665
H LA+D+ G+ ++WG + GQ G + +G + K A K V QVA G
Sbjct: 100 GWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGG 159
Query: 666 YHSVALTNSGDLYSW 710
HSV LT G +++W
Sbjct: 160 THSVVLTREGHVWTW 174
Score = 70.9 bits (166), Expect = 8e-13
Identities = 41/129 (31%), Positives = 68/129 (52%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
++ VAAG HS+ L+ GH+++ GQ + P V+ ++ + IA G
Sbjct: 152 VRQVAAGGTHSVVLTREGHVWTW-----GQPWPPGDIKQISVPVRVQGLEN--VRLIAVG 204
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
H+LA++E G+ +WG++ GQLG P V+GL ++ +A G +HS AL
Sbjct: 205 AFHNLALEEDGRLLAWGNNEYGQLGTG-DTQPTSHPVPVQGLDDLTLVDIAAGGWHSTAL 263
Query: 684 TNSGDLYSW 710
T+ G++Y W
Sbjct: 264 TDKGEVYGW 272
Score = 64.9 bits (151), Expect = 5e-11
Identities = 33/106 (31%), Positives = 57/106 (53%)
Frame = +3
Query: 393 GNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQ 572
G+ + GQLG T + + +VE + ++ ++ G ++SLAI + G F+WG + G
Sbjct: 11 GSGEDGQLGIGTNEEK-EWACVVEALEPYSVRSVVSGSRNSLAICDDGTMFTWGWNQRGT 69
Query: 573 LGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
LG+ ++ P VK LA + Q A G +H +A+ + G Y+W
Sbjct: 70 LGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAW 115
Score = 55.6 bits (128), Expect = 3e-08
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Frame = +3
Query: 198 LQNYKKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSG 377
L+ ++ WGN + +L +Q T P + + + +AAG +HS L++ G
Sbjct: 211 LEEDGRLLAWGNNEYGQLGTGDTQPTS---HPVPVQGLDDLTLVDIAAGGWHSTALTDKG 267
Query: 378 HLYSCGNNDVGQLGRQTESDNGKN-PALVETFKDCTISTIACGLQHSLAIDEWGQPFSWG 554
+Y G + G+LG + K P V + I ++CG HS+A+ G+ FS+G
Sbjct: 268 EVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHSVALTRDGRIFSFG 327
Query: 555 SDSMGQLG 578
G+LG
Sbjct: 328 RGDHGRLG 335
Score = 54.4 bits (125), Expect = 7e-08
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 7/172 (4%)
Frame = +3
Query: 216 MFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCG 395
MF WG L T+ + P+ K + I A G +H L + + G Y+ G
Sbjct: 59 MFTWGWNQRGTLGHQPETKTENI--PSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWG 116
Query: 396 NNDVGQLGRQTESDNGKNPALVETF--KDC----TISTIACGLQHSLAIDEWGQPFSWGS 557
N+ GQ G + D P + K C T+ +A G HS+ + G ++WG
Sbjct: 117 GNEYGQCGEEPLKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQ 176
Query: 558 D-SMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
G + P V+GL +NV +A GA+H++AL G L +W
Sbjct: 177 PWPPGDI------KQISVPVRVQGL--ENVRLIAVGAFHNLALEEDGRLLAW 220
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 89.8 bits (213), Expect = 2e-18
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Frame = +3
Query: 318 DHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIA 497
++++ +A G FH+L L G L++ GNN+ GQLG ++ P V+ D T+ IA
Sbjct: 196 ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLG-TGDTQPRSYPIPVQGLDDLTLVDIA 254
Query: 498 CGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAYHS 674
G HS A+ G+ + WG G+LG + ++ P+ V LA +++IQV+CG HS
Sbjct: 255 AGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHS 314
Query: 675 VALTNSGDLYSW 710
VALT G ++S+
Sbjct: 315 VALTRDGRIFSF 326
Score = 74.5 bits (175), Expect = 6e-14
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Frame = +3
Query: 312 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIST 491
E ++++V G +SL + + G L++ G N G LG E+ P+LV++ + I
Sbjct: 36 EPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQ 95
Query: 492 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKP-----KFVKGLATK-NVIQV 653
A G H LA+D+ G+ ++WG + GQ G +P K A + V QV
Sbjct: 96 AAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQV 155
Query: 654 ACGAYHSVALTNSGDLYSW 710
A G HSV LT G +++W
Sbjct: 156 AAGGTHSVVLTREGYVWTW 174
Score = 67.7 bits (158), Expect = 7e-12
Identities = 32/116 (27%), Positives = 65/116 (56%)
Frame = +3
Query: 363 LSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQP 542
++++ + + G+ + GQLG T+ + + ++V+ + + ++ G ++SLAI + G+
Sbjct: 1 MASATSVIAWGSGEDGQLGLGTDEEK-ELASVVDALEPFNVRSVVGGSRNSLAICDDGKL 59
Query: 543 FSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
F+WG + G LG+ + P VK LA ++Q A G +H +A+ + G Y+W
Sbjct: 60 FTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAW 115
Score = 58.8 bits (136), Expect = 3e-09
Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 7/173 (4%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
K+F WG L T+ P+L K + I A G +H L + + G Y+
Sbjct: 58 KLFTWGWNQRGTLGHPPETKTEST--PSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAW 115
Query: 393 GNNDVGQLGRQTESDNGKNPALVETF--KDC----TISTIACGLQHSLAIDEWGQPFSWG 554
G N+ GQ G + D P + K C T+ +A G HS+ + G ++WG
Sbjct: 116 GGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWG 175
Query: 555 SD-SMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
G + P V+GL +NV +A GA+H++AL G L++W
Sbjct: 176 QPWPPGDI------KQISVPVRVQGL--ENVRLIAVGAFHNLALKEDGTLWAW 220
Score = 53.2 bits (122), Expect = 2e-07
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Frame = +3
Query: 216 MFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCG 395
++ WGN + +L G+ T P + + + +AAG +HS L+N G +Y G
Sbjct: 217 LWAWGNNEYGQL---GTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTALTNEGEVYGWG 273
Query: 396 NNDVGQLGRQTESDNGKN-PALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQ 572
+ G+LG + K P V I ++CG HS+A+ G+ FS+G G+
Sbjct: 274 RGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGR 333
Query: 573 LG 578
LG
Sbjct: 334 LG 335
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 89.8 bits (213), Expect = 2e-18
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 1/167 (0%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
K+F WG + +L I ++ + +S + +S QA AAG HS ++S+SG +++C
Sbjct: 68 KVFTWGRGSSGQL--GHGDILNITLPKLVSFFDDSVITQA-AAGWSHSGFVSDSGCIFTC 124
Query: 393 GNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQ 572
GN GQLG ++ + PA V F + ++ +ACG++HSL + Q +GS GQ
Sbjct: 125 GNGSFGQLG-HGDTLSLSTPAKVSHFNNDSVKMVACGMRHSLVLFAGNQVCGFGSGKRGQ 183
Query: 573 LG-NNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
LG ++ + + P V GL V++++ HS A++ G +SW
Sbjct: 184 LGFSSDRIKSVNLPCVVSGLKDVEVVRISANGDHSAAISADGQFFSW 230
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/109 (32%), Positives = 55/109 (50%)
Frame = +3
Query: 381 LYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSD 560
++S G GQLG T+ + P L+ +IS +ACG H +A+ G+ F+WG
Sbjct: 17 VWSWGAGTDGQLGT-TKLQDELLPQLLSLTSLPSISMLACGGAHVIALTSGGKVFTWGRG 75
Query: 561 SMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYS 707
S GQLG+ + PK V + Q A G HS +++SG +++
Sbjct: 76 SSGQLGHGDILNI-TLPKLVSFFDDSVITQAAAGWSHSGFVSDSGCIFT 123
Score = 50.8 bits (116), Expect = 9e-07
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Frame = +3
Query: 315 SDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKN-PALVETFKDCTIST 491
+D ++ VA G HSL L + G+ GQLG ++ N P +V KD +
Sbjct: 151 NDSVKMVACGMRHSLVLFAGNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEVVR 210
Query: 492 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 671
I+ HS AI GQ FSWG G G ++ A Q P + + +VA G H
Sbjct: 211 ISANGDHSAAISADGQFFSWGRGFCG--GPDVHA-PQSLP------SPLSFREVAVGWNH 261
Query: 672 SVALTNSGDLY 704
++ LT G+++
Sbjct: 262 ALLLTVDGEVF 272
Score = 44.8 bits (101), Expect = 6e-05
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Frame = +3
Query: 333 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPAL--VETFKDCTISTIACGL 506
VA G H+L L+ G ++ G+ Q +Q + V F + IA G
Sbjct: 255 VAVGWNHALLLTVDGEVFKLGSTLNKQPEKQQLQIDSSEALFEKVPDFDGVKVMQIAAGA 314
Query: 507 QHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVK----GLATKNVIQVACGAYHS 674
+HS A+ E G+ +WG GQLG + Q P+ V L TK I+V CG+ +
Sbjct: 315 EHSAAVTENGEVKTWGWGEHGQLGLG-NTNDQTSPELVSLGSIDLRTKE-IKVYCGSGFT 372
Query: 675 VALTNSGDL 701
A+ +L
Sbjct: 373 YAVKRKQEL 381
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 525 DEWGQPFSWGSDSMGQLGNNLGAHAQDK--PKFVKGLATKNVIQVACGAYHSVALTNSGD 698
+E Q +SWG+ + GQLG QD+ P+ + + ++ +ACG H +ALT+ G
Sbjct: 12 EEEEQVWSWGAGTDGQLGTT---KLQDELLPQLLSLTSLPSISMLACGGAHVIALTSGGK 68
Query: 699 LYSW 710
+++W
Sbjct: 69 VFTW 72
Score = 38.3 bits (85), Expect = 0.005
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 2/164 (1%)
Frame = +3
Query: 225 WGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNND 404
+G+ +L +I + + +S K+ + ++ A G+ HS +S G +S G
Sbjct: 176 FGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEVVRISANGD-HSAAISADGQFFSWGRGF 234
Query: 405 VGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNN 584
G G + L +F++ +A G H+L + G+ F GS Q
Sbjct: 235 CG--GPDVHAPQSLPSPL--SFRE-----VAVGWNHALLLTVDGEVFKLGSTLNKQPEKQ 285
Query: 585 LGAHAQDKPKFVK--GLATKNVIQVACGAYHSVALTNSGDLYSW 710
+ F K V+Q+A GA HS A+T +G++ +W
Sbjct: 286 QLQIDSSEALFEKVPDFDGVKVMQIAAGAEHSAAVTENGEVKTW 329
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALV 461
+ +AAG HS ++ +G + + G + GQLG +D +P LV
Sbjct: 307 VMQIAAGAEHSAAVTENGEVKTWGWGEHGQLGLGNTNDQ-TSPELV 351
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 85.0 bits (201), Expect = 4e-17
Identities = 44/106 (41%), Positives = 64/106 (60%)
Frame = +3
Query: 393 GNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQ 572
GN+ VG + + D+ AL T + IACG QH++ + + G+ FSWG +S G+
Sbjct: 305 GNHRVGS-SLEIKMDSLLPKALESTIV-LDVQNIACGGQHAVLVTKQGESFSWGEESEGR 362
Query: 573 LGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
LG+ + ++ Q PK + L T N+ VACG YHS A+T SGDLY+W
Sbjct: 363 LGHGVDSNVQH-PKLIDALNTTNIELVACGEYHSCAVTLSGDLYTW 407
Score = 75.4 bits (177), Expect = 4e-14
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
+Q +A G H++ ++ G +S G G+LG +S N ++P L++ I +ACG
Sbjct: 333 VQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDS-NVQHPKLIDALNTTNIELVACG 391
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATK-NVIQVACGAYHSVA 680
HS A+ G ++WG G LG+ + PK V L +V +ACG YH+
Sbjct: 392 EYHSCAVTLSGDLYTWGKGDFGILGHG-NEVSHWVPKRVNFLMEGIHVSSIACGPYHTAV 450
Query: 681 LTNSGDLYSW 710
+T++G L+++
Sbjct: 451 VTSAGQLFTF 460
Score = 74.1 bits (174), Expect = 8e-14
Identities = 46/155 (29%), Positives = 73/155 (47%)
Frame = +3
Query: 219 FCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGN 398
F WG + L G + V P L + +I+ VA GE+HS ++ SG LY+ G
Sbjct: 353 FSWGEESEGRL---GHGVDSNVQHPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGK 409
Query: 399 NDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLG 578
D G LG E + + + +S+IACG H+ + GQ F++G + G LG
Sbjct: 410 GDFGILGHGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLG 469
Query: 579 NNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
+ + P+ V L ++ ACG +H+ A+
Sbjct: 470 HG-DRKSVFIPREVDSLKGLRTVRAACGVWHTAAV 503
Score = 67.7 bits (158), Expect = 7e-12
Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
K+F WG+ L G + LV PT + VA G ++ L+ SGH+Y+
Sbjct: 520 KLFTWGDGDKSRLG-HGDKEPKLV--PTCVAALVEPNFCQVACGHSLTVALTTSGHVYTM 576
Query: 393 GNNDVGQLGRQTESDNGKNPALVE-TFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMG 569
G+ GQLG +GK P V+ + IACG H + + ++WG S G
Sbjct: 577 GSPVYGQLGNPHA--DGKVPTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNG 634
Query: 570 QLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
+LG+ A ++ P V+ L K V +ACG+ + A+
Sbjct: 635 RLGHG-DADDRNSPTLVESLKDKQVKSIACGSNFTAAV 671
Score = 62.9 bits (146), Expect = 2e-10
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Frame = +3
Query: 369 NSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFS 548
+SG L++ G+ D +LG + + P V + +ACG ++A+ G ++
Sbjct: 517 SSGKLFTWGDGDKSRLGHG-DKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYT 575
Query: 549 WGSDSMGQLGNNLGAHAQDK-PKFVKGLATKNVIQ-VACGAYHSVALTNSGDLYSW 710
GS GQLGN HA K P V G K+ ++ +ACGAYH LT+ ++Y+W
Sbjct: 576 MGSPVYGQLGN---PHADGKVPTRVDGKLHKSFVEEIACGAYHVAVLTSRTEVYTW 628
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 83.8 bits (198), Expect = 1e-16
Identities = 45/129 (34%), Positives = 72/129 (55%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
+ +V+ G F ++ L+ G L++ G N +LGR ++ G P V + + I+ IACG
Sbjct: 264 VASVSCGGFFTMALTKEGQLWNWGANSNYELGRG-DNLGGWEPMPVPSLEGVRITQIACG 322
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
HSLA+ E G+ SWG GQLG++ Q P ++ LA K ++ +A G S A+
Sbjct: 323 GYHSLALTEEGKVLSWGHGGHGQLGSS-SLRNQKVPTEIEALADKKIVFIASGGSSSAAI 381
Query: 684 TNSGDLYSW 710
T+ G+L+ W
Sbjct: 382 TDGGELWMW 390
Score = 73.3 bits (172), Expect = 1e-13
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Frame = +3
Query: 282 VIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALV 461
V P L+ E I+ +A G HS+ L++ G +++ G G LG + + P V
Sbjct: 140 VFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRE-LVPRRV 198
Query: 462 ETFKDCTISTIACGLQHSLAIDEWGQPFSWG-SDSMGQLGNNLGAHAQD-----KPKFVK 623
+ DC IS IA H+ AI E G+ + WG + G+LG G + P VK
Sbjct: 199 DDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 258
Query: 624 GLATKNVIQVACGAYHSVALTNSGDLYSW 710
L T V V+CG + ++ALT G L++W
Sbjct: 259 AL-TVPVASVSCGGFFTMALTKEGQLWNW 286
Score = 61.7 bits (143), Expect = 5e-10
Identities = 41/126 (32%), Positives = 62/126 (49%)
Frame = +3
Query: 333 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQH 512
++ G FHS L+ G L+ G D G+LG E+ P L F++ +I IA G H
Sbjct: 106 ISCGLFHS-GLTIDGDLWIWGKGDGGRLGFGQENSVFV-PNLNPLFEEHSIRCIALGGLH 163
Query: 513 SLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNS 692
S+A+ G F+WG G LG+ + + P+ V + +A H+ A+T S
Sbjct: 164 SVALTHQGDVFTWGYGGFGALGHKVYTR-ELVPRRVDDSWDCKISAIATSGTHTAAITES 222
Query: 693 GDLYSW 710
G+LY W
Sbjct: 223 GELYMW 228
Score = 56.8 bits (131), Expect = 1e-08
Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
+++ WG +++EL G + P S E I +A G +HSL L+ G + S
Sbjct: 282 QLWNWGANSNYELG-RGDNLGGWEPMPVPSL--EGVRITQIACGGYHSLALTEEGKVLSW 338
Query: 393 GNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQ 572
G+ GQLG + N K P +E D I IA G S AI + G+ + WG+ Q
Sbjct: 339 GHGGHGQLG-SSSLRNQKVPTEIEALADKKIVFIASGGSSSAAITDGGELWMWGNAKDFQ 397
Query: 573 LGNNLGAHAQDKPKFVKGLATKN------VIQVACGAYHSVALTN 689
LG Q P V L ++ VI ++ GA H++ L +
Sbjct: 398 LGVPGLPEIQTTPVEVNFLTEEDECQPHKVISISIGASHALCLVS 442
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 83.8 bits (198), Expect = 1e-16
Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 3/144 (2%)
Frame = +3
Query: 288 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGR---QTESDNGKNPAL 458
+PT+ SD I +++AG +HSL +++SG +++ G ND GQLGR + D+ P
Sbjct: 73 EPTVVSNLPSD-ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKR 131
Query: 459 VETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATK 638
VE ++ + S AI + G + WG GQLG G P V+ LA +
Sbjct: 132 VEGLENVNVQAAFASGVVSAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAE 191
Query: 639 NVIQVACGAYHSVALTNSGDLYSW 710
+V++V+ G H++ALT G ++ W
Sbjct: 192 HVVKVSLGWGHALALTVDGKVFGW 215
Score = 70.1 bits (164), Expect = 1e-12
Identities = 49/143 (34%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Frame = +3
Query: 288 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVET 467
+P L + ++ + +A G HSL L + G L S G+N GQLGR ++ D G P
Sbjct: 276 EPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGR-SKQDLGMKPV---D 331
Query: 468 FKDCTISTIACGLQHSLAIDEWGQP--FSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKN 641
+ IS IA GL HSLAI G+ SWG + QLG ++ P+ V+G ++
Sbjct: 332 ITESPIS-IAAGLGHSLAICNRGERNILSWGWNRSRQLGR---GKPENLPREVEGFDGES 387
Query: 642 VIQVACGAYHSVALTNSGDLYSW 710
V+ G HS+ +T G+ + W
Sbjct: 388 PASVSAGRVHSLCVTEKGEAWVW 410
Score = 50.0 bits (114), Expect = 2e-06
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Frame = +3
Query: 330 AVAAGEFHSLYLSNSG--HLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
++AAG HSL + N G ++ S G N QLGR + P VE F + ++++ G
Sbjct: 338 SIAAGLGHSLAICNRGERNILSWGWNRSRQLGRGKPENL---PREVEGFDGESPASVSAG 394
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
HSL + E G+ + WG G+LG LG+ + + + V+Q G HS+ L
Sbjct: 395 RVHSLCVTEKGEAWVWGCGKNGRLG--LGSSSDEPEPMLLEDVEGCVLQAVAGFDHSLIL 452
Score = 48.0 bits (109), Expect = 6e-06
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Frame = +3
Query: 312 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIST 491
E+ + ++ G + + +L + V + ++ + P LVE + ++
Sbjct: 231 EASLLDSITDGSMKGHHAAGDLNLEAAEKKVVEAMSKENDMPIAWEPCLVEETCNEKVAD 290
Query: 492 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 671
IACG HSL + G S GS+ GQLG + KP + T++ I +A G H
Sbjct: 291 IACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQDLGM-KPVDI----TESPISIAAGLGH 345
Query: 672 SVALTNSGD--LYSW 710
S+A+ N G+ + SW
Sbjct: 346 SLAICNRGERNILSW 360
Score = 46.4 bits (105), Expect = 2e-05
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Frame = +3
Query: 213 KMFCWGNATHHEL---CIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHL 383
+++ WG +L ID S+ D +P + E+ ++QA A S + + G L
Sbjct: 102 EIWAWGRNDEGQLGRIVIDSSR--DSRSEPKRVEGLENVNVQAAFASGVVSAAIGDDGSL 159
Query: 384 YSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDS 563
+ G + GQLG + P+ VE + ++ G H+LA+ G+ F WG +
Sbjct: 160 WVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHALALTVDGKVFGWGYVA 219
Query: 564 MGQLGN 581
G++GN
Sbjct: 220 DGRVGN 225
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/87 (42%), Positives = 57/87 (65%)
Frame = +3
Query: 450 PALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL 629
P +E+ + IACG QH++ + + G+ FSWG +S G+LG+ + ++ Q +PK + L
Sbjct: 286 PKALESTIVLDVQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQ-QPKLIDAL 344
Query: 630 ATKNVIQVACGAYHSVALTNSGDLYSW 710
T N+ VACG +HS A+T SGDLY+W
Sbjct: 345 NTTNIELVACGEFHSCAVTLSGDLYTW 371
Score = 76.2 bits (179), Expect = 2e-14
Identities = 46/155 (29%), Positives = 74/155 (47%)
Frame = +3
Query: 219 FCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGN 398
F WG + L G + + +P L + +I+ VA GEFHS ++ SG LY+ G
Sbjct: 317 FSWGEESEGRL---GHGVDSNIQQPKLIDALNTTNIELVACGEFHSCAVTLSGDLYTWGK 373
Query: 399 NDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLG 578
D G LG E + + + +S+IACG H+ + GQ F++G + G LG
Sbjct: 374 GDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHTAVVTSAGQLFTFGDGTFGVLG 433
Query: 579 NNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
+ + P+ V L ++ ACG +H+ A+
Sbjct: 434 HG-DKKSVFIPREVDSLKGLRTVRAACGVWHTAAV 467
Score = 74.1 bits (174), Expect = 8e-14
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 1/130 (0%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
+Q +A G H++ ++ G +S G G+LG +S N + P L++ I +ACG
Sbjct: 297 VQNIACGGQHAVLVTKQGESFSWGEESEGRLGHGVDS-NIQQPKLIDALNTTNIELVACG 355
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATK-NVIQVACGAYHSVA 680
HS A+ G ++WG G LG+ + PK V L +V +ACG YH+
Sbjct: 356 EFHSCAVTLSGDLYTWGKGDFGVLGHG-NEVSHWVPKRVNFLLEGIHVSSIACGPYHTAV 414
Query: 681 LTNSGDLYSW 710
+T++G L+++
Sbjct: 415 VTSAGQLFTF 424
Score = 68.1 bits (159), Expect = 5e-12
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 1/158 (0%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
K+F WG+ L G++ LV PT + VA G ++ L+ SGH+Y+
Sbjct: 484 KLFTWGDGDKGRLG-HGNKEPKLV--PTCVAALVEPNFCQVACGHSLTVALTTSGHVYTM 540
Query: 393 GNNDVGQLGRQTESDNGKNPALVE-TFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMG 569
G+ GQLG + +D GK P VE + IACG H + + ++WG S G
Sbjct: 541 GSPVYGQLGN-SHAD-GKTPNRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNG 598
Query: 570 QLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
+LG+ ++ P V+ L K V +ACG + A+
Sbjct: 599 RLGHG-DVDDRNSPTLVESLKDKQVKSIACGTNFTAAV 635
Score = 67.3 bits (157), Expect = 9e-12
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Frame = +3
Query: 369 NSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFS 548
+SG L++ G+ D G+LG + P V + +ACG ++A+ G ++
Sbjct: 481 SSGKLFTWGDGDKGRLGHGNKEPK-LVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYT 539
Query: 549 WGSDSMGQLGNNLGAHAQDK-PKFVKGLATKNVIQ-VACGAYHSVALTNSGDLYSW 710
GS GQLGN+ HA K P V+G K+ ++ +ACGAYH LT+ ++Y+W
Sbjct: 540 MGSPVYGQLGNS---HADGKTPNRVEGKLHKSFVEEIACGAYHVAVLTSRTEVYTW 592
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 83.0 bits (196), Expect = 2e-16
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 2/134 (1%)
Frame = +3
Query: 315 SDH-IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIST 491
SDH I AVA G H+L+L+ + +++ G ND GQLG + +P V D I
Sbjct: 80 SDHSITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGL-DKDILH 138
Query: 492 IACGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAY 668
I+ G HS AI G+ + WG +S GQLG A P V+ L + VA G+
Sbjct: 139 ISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSE 198
Query: 669 HSVALTNSGDLYSW 710
HSVA+T+ G++ SW
Sbjct: 199 HSVAVTDGGEVLSW 212
Score = 78.6 bits (185), Expect = 4e-15
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
+++ WG + +L + G + +V PT + IQ+VA G HS+ +++ G + S
Sbjct: 154 ELYMWGKNSSGQLGL-GKKAARVVRVPTKVEALHGITIQSVALGSEHSVAVTDGGEVLSW 212
Query: 393 GNNDVGQLGRQTESD-------NGK-NPALVETFKDCTISTIACGLQHSLAIDEWGQPFS 548
G G+LG +S N + P L++ + ++ +A GL HS DE G F
Sbjct: 213 GGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGLLHSACTDENGSAFM 272
Query: 549 WGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+G S+ ++G G P + + +VACG YH+ +T G+LY+W
Sbjct: 273 FGEKSINKMGFG-GVRNATTPSIISEVPYAE--EVACGGYHTCVVTRGGELYTW 323
Score = 73.3 bits (172), Expect = 1e-13
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 3/118 (2%)
Frame = +3
Query: 366 SNSGHLYSC--GNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQ 539
S SG ++ G+ D G+LG D+ PA+ D +I+ +ACG H+L + E +
Sbjct: 44 SESGKRFAAMWGSGDYGRLGLGN-LDSQWTPAVCSALSDHSITAVACGGAHTLFLTETRR 102
Query: 540 PFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
F+ G + GQLG +++ +HA D P V GL K+++ ++ G YHS A+T G+LY W
Sbjct: 103 VFATGLNDCGQLGVSDVKSHAMD-PLEVSGL-DKDILHISAGYYHSAAITVDGELYMW 158
Score = 72.1 bits (169), Expect = 3e-13
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Frame = +3
Query: 333 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNG-KNPALVETFKDCTISTIACGLQ 509
++AG +HS ++ G LY G N GQLG ++ + P VE TI ++A G +
Sbjct: 139 ISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSE 198
Query: 510 HSLAIDEWGQPFSWGSDSMGQLGNN--------LGAHAQDKPKFVKGLATKNVIQVACGA 665
HS+A+ + G+ SWG G+LG+ L ++++ P+ +K L V VA G
Sbjct: 199 HSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGL 258
Query: 666 YHSVALTNSGDLY 704
HS +G +
Sbjct: 259 LHSACTDENGSAF 271
Score = 55.2 bits (127), Expect = 4e-08
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Frame = +3
Query: 312 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE-TFKDCTIS 488
E + + VA G +H+ ++ G LY+ G+N+ G LG + + +P VE F + T+S
Sbjct: 297 EVPYAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDS-TYVSHSPVRVEGPFLESTVS 355
Query: 489 TIACGLQHSLAIDE-----WGQPFSWGSDSMG--QLGNNLGAHAQD----KPKFVKGLAT 635
++CG +H+ AI + WG S G+ S+ G LG H D +P V
Sbjct: 356 QVSCGWKHTAAISDNNVFTWGWGGSHGTFSVDGHSSGGQLG-HGSDVDYARPAMVDLGKN 414
Query: 636 KNVIQVACGAYHSVAL 683
+ ++CG H+ A+
Sbjct: 415 VRAVHISCGFNHTAAV 430
Score = 32.7 bits (71), Expect = 0.25
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +3
Query: 237 THHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC-GNNDVGQ 413
+H + ++G + V + + WK H A++ + S +S G++ GQ
Sbjct: 339 SHSPVRVEGPFLESTVSQVSCG-WK---HTAAISDNNVFTWGWGGSHGTFSVDGHSSGGQ 394
Query: 414 LGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDE 530
LG ++ D + PA+V+ K+ I+CG H+ A+ E
Sbjct: 395 LGHGSDVDYAR-PAMVDLGKNVRAVHISCGFNHTAAVLE 432
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 81.4 bits (192), Expect = 5e-16
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Frame = +3
Query: 228 GNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDV 407
G H E I Q + + +S S ++AVAA + H++ + G +Y+ G+N
Sbjct: 216 GRLGHPEFDIHSGQAAVITPRQVISGLG-SRRVKAVAAAKHHTVIATEGGDVYTWGSNRE 274
Query: 408 GQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNL 587
GQLG T D P V + K I ++ +H+ + + G+ F+WG + GQLG
Sbjct: 275 GQLG-YTSVDTQATPRKVTSLK-AKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGT 332
Query: 588 GAHAQD-KPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
A + P+ V L K +A YH++ L N G++Y+W
Sbjct: 333 SNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTW 374
Score = 59.3 bits (137), Expect = 2e-09
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Frame = +3
Query: 381 LYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSD 560
++S GN QLG + K P V++ C I ++ HS+AI G+ ++WG
Sbjct: 155 VFSWGNGANYQLGTGNQHVQ-KVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVYTWGFG 213
Query: 561 SMGQLGN-----NLGAHAQDKPK-FVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
G+LG+ + G A P+ + GL ++ V VA +H+V T GD+Y+W
Sbjct: 214 RGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGDVYTW 269
Score = 51.6 bits (118), Expect = 5e-07
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
++F WG +L G+ + P L + + A+A+ ++H+L L N G +Y+
Sbjct: 316 EVFTWGCNKEGQLGY-GTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTW 374
Query: 393 GNNDVGQLGRQTESDNGK---NPAL-VETFKDCTISTIACGLQHSLAIDEWGQPFSWGSD 560
G+ V R S N K N L + ++ IA G+ HSLA+ E G F W S
Sbjct: 375 GHRLVTPR-RVIISRNLKKAGNTLLNFHRRRPLRLTAIAAGMVHSLALAEDGAFFYWVSS 433
Query: 561 SMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+NL + L K V+ ++ G Y + A+T++G++Y W
Sbjct: 434 D-----SNLRCQQ------LHSLHGKTVVSISAGKYWASAVTSTGEVYMW 472
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 81.4 bits (192), Expect = 5e-16
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Frame = +3
Query: 228 GNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDV 407
G H E I Q + + +S S ++AVAA + H++ + G +Y+ G+N
Sbjct: 213 GRLGHPEFDIHSGQAAVITPRQVISGLG-SRRVKAVAAAKHHTVIATEGGDVYTWGSNRE 271
Query: 408 GQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNL 587
GQLG T D P V + K I ++ +H+ + + G+ F+WG + GQLG
Sbjct: 272 GQLG-YTSVDTQATPRKVTSLK-AKIVAVSAANKHTAVVSDCGEVFTWGCNKEGQLGYGT 329
Query: 588 GAHAQD-KPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
A + P+ V L K +A YH++ L N G++Y+W
Sbjct: 330 SNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTW 371
Score = 66.1 bits (154), Expect = 2e-11
Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 7/177 (3%)
Frame = +3
Query: 201 QNYKKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGH 380
Q ++F WGN +++L G+Q V P I+ V+A +FHS+ +S G
Sbjct: 147 QQSSEVFSWGNGANYQLG-TGNQHVQKV--PGRVDSLHGCFIKLVSAAKFHSVAISTHGE 203
Query: 381 LYSCGNNDVGQLGRQTESDNGKNPALVETFKDC-------TISTIACGLQHSLAIDEWGQ 539
+Y+ G G+LG E D A V T + + +A H++ E G
Sbjct: 204 VYTWGFGRGGRLG-HPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATEGGD 262
Query: 540 PFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
++WGS+ GQLG Q P+ V L K ++ V+ H+ +++ G++++W
Sbjct: 263 VYTWGSNREGQLGYT-SVDTQATPRKVTSLKAK-IVAVSAANKHTAVVSDCGEVFTW 317
Score = 51.6 bits (118), Expect = 5e-07
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 4/170 (2%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
++F WG +L G+ + P L + + A+A+ ++H+L L N G +Y+
Sbjct: 313 EVFTWGCNKEGQLGY-GTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTW 371
Query: 393 GNNDVGQLGRQTESDNGK---NPAL-VETFKDCTISTIACGLQHSLAIDEWGQPFSWGSD 560
G+ V R S N K N L + ++ IA G+ HSLA+ E G F W S
Sbjct: 372 GHRLVTPR-RVIISRNLKKAGNTLLNFHRRRPLRLTAIAAGMVHSLALAEDGAFFYWVSS 430
Query: 561 SMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+NL + L K V+ ++ G Y + A+T++G++Y W
Sbjct: 431 D-----SNLRCQQ------LHSLHGKTVVSISAGKYWASAVTSTGEVYMW 469
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 79.4 bits (187), Expect = 2e-15
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 11/140 (7%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKD--------C 479
I+ V+ G H + LS G L + G N+ GQLGR + + P ++ +
Sbjct: 168 IRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELV 227
Query: 480 TISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK---PKFVKGLATKNVIQ 650
I ++CG H+ A+ + G+ ++WG SMGQLG ++ + DK P+ V GL ++ +
Sbjct: 228 KIMQLSCGEYHTAALSDAGEVYTWGLGSMGQLG-HVSLQSGDKELIPRRVVGLDGVSMKE 286
Query: 651 VACGAYHSVALTNSGDLYSW 710
VACG H+ AL+ G LY+W
Sbjct: 287 VACGGVHTCALSLEGALYAW 306
Score = 55.6 bits (128), Expect = 3e-08
Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Frame = +3
Query: 333 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQH 512
++ G H+ +++ G L++ G N+ GQLG TE K+P V+ + + ++CG
Sbjct: 66 ISCGREHTAAVASDGSLFAWGANEYGQLGDGTEVGR-KHPKKVKQLQSEFVKFVSCGAFC 124
Query: 513 SLAIDEWGQPFSWGSDS-MGQLGNNLGAHAQDKPKFVKGL--ATKNVIQVACGAYHSVAL 683
+ AI E + S S + G N G++ P+ G AT + QV+CG H VAL
Sbjct: 125 TAAIAEPRENDGTLSTSRLWVWGQNQGSNL---PRLFSGAFPATTAIRQVSCGTAHVVAL 181
Query: 684 TNSGDLYSW 710
+ G L +W
Sbjct: 182 SEEGLLQAW 190
Score = 51.6 bits (118), Expect = 5e-07
Identities = 50/177 (28%), Positives = 74/177 (41%), Gaps = 9/177 (5%)
Frame = +3
Query: 198 LQNYKKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSG 377
L + +++ WG + +L Q D + P + ++ VA G H+ LS G
Sbjct: 242 LSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACGGVHTCALSLEG 301
Query: 378 HLYSCGNNDVGQLGRQTES------DNGKNPAL--VETFKDCT-ISTIACGLQHSLAIDE 530
LY+ G GQLG +S NG L V T + +ACG H+L
Sbjct: 302 ALYAWGGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDVRLVACGHSHTLVYMR 361
Query: 531 WGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDL 701
G+ WG +S GQ N ++A P V V ++A G HS LT++ L
Sbjct: 362 EGRICGWGYNSYGQAANEKSSYAW-YPSPV-DWCVGQVRKLAAGGGHSAVLTDAFSL 416
Score = 50.8 bits (116), Expect = 9e-07
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Frame = +3
Query: 354 SLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPA-LVETFKDCTIST------IACGLQH 512
S+ + +Y G N GQ GR + + P L C I+CG +H
Sbjct: 13 SVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGANSRWLDISCGREH 72
Query: 513 SLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
+ A+ G F+WG++ GQLG+ + PK VK L ++ V V+CGA+ + A+
Sbjct: 73 TAAVASDGSLFAWGANEYGQLGDGTEV-GRKHPKKVKQLQSEFVKFVSCGAFCTAAI 128
Score = 31.1 bits (67), Expect = 0.75
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Frame = +3
Query: 513 SLAIDEWGQPFSWGSDSMGQLGNN-----LGAHAQDKPKFVKGLATKNV--IQVACGAYH 671
S++I + WG + GQ G N L Q P+ A N + ++CG H
Sbjct: 13 SVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGANSRWLDISCGREH 72
Query: 672 SVALTNSGDLYSW 710
+ A+ + G L++W
Sbjct: 73 TAAVASDGSLFAW 85
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 79.4 bits (187), Expect = 2e-15
Identities = 47/167 (28%), Positives = 85/167 (50%)
Frame = +3
Query: 210 KKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYS 389
K + WG T IDGS+ + + P L + +Q+++ G H+ ++ G ++
Sbjct: 259 KDIMIWGAITG---LIDGSKNQNDALSPKLLESATMFDVQSISLGAKHAALVTRQGEVFC 315
Query: 390 CGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMG 569
GN + G+LG + D +P VE+ +D + ++AC + A+ E G+ + WG D G
Sbjct: 316 WGNGNSGKLGLKVNIDID-HPKRVESLEDVAVRSVACSDHQTCAVTESGELYLWGIDG-G 373
Query: 570 QLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+ + K V G + V+ VACGA+H+ +T+SG L+++
Sbjct: 374 TIEQSGSQFLTRKISDVLG-GSLTVLSVACGAWHTAIVTSSGQLFTY 419
Score = 67.3 bits (157), Expect = 9e-12
Identities = 45/162 (27%), Positives = 78/162 (48%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
++FCWGN +L G ++ + P + E +++VA + + ++ SG LY
Sbjct: 312 EVFCWGNGNSGKL---GLKVNIDIDHPKRVESLEDVAVRSVACSDHQTCAVTESGELYLW 368
Query: 393 GNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQ 572
G D G + Q+ S T+ ++ACG H+ + GQ F++GS + G
Sbjct: 369 GI-DGGTI-EQSGSQFLTRKISDVLGGSLTVLSVACGAWHTAIVTSSGQLFTYGSGTFGV 426
Query: 573 LGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGD 698
LG+ + KPK V+ L VI V+CG +H+ A+ + +
Sbjct: 427 LGHG-SLESVTKPKEVESLRRMKVISVSCGPWHTAAIVETAN 467
Score = 58.4 bits (135), Expect = 4e-09
Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 16/144 (11%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
+ +VA G +H+ +++SG L++ G+ G LG + K P VE+ + + +++CG
Sbjct: 397 VLSVACGAWHTAIVTSSGQLFTYGSGTFGVLGHGSLESVTK-PKEVESLRRMKVISVSCG 455
Query: 504 LQHSLAIDEW------------GQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNV- 644
H+ AI E G+ F+WG G+LG HA K K V T+ +
Sbjct: 456 PWHTAAIVETANDRKFYNAKSCGKLFTWGDGDKGRLG-----HADSKRKLVPTCVTELID 510
Query: 645 ---IQVACGAYHSVALTNSGDLYS 707
I+V+CG +VAL+ SG +Y+
Sbjct: 511 HDFIKVSCGWTLTVALSISGTVYT 534
Score = 56.0 bits (129), Expect = 2e-08
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPT-LSKWKESDHIQAVAAGEFHSLYLSNSGHLYS 389
K+F WG+ L G + + PT +++ + D I+ V+ G ++ LS SG +Y+
Sbjct: 479 KLFTWGDGDKGRL---GHADSKRKLVPTCVTELIDHDFIK-VSCGWTLTVALSISGTVYT 534
Query: 390 CGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMG 569
G++ GQLG D N L + + IA G H + +G ++WG G
Sbjct: 535 MGSSIHGQLGCPRAKDKSVNVVLGNLTRQF-VKDIASGSHHVAVLTSFGNVYTWGKGMNG 593
Query: 570 QLGNNLG-AHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
QLG LG ++ P V+ L + V +ACG + A+
Sbjct: 594 QLG--LGDVRDRNSPVLVEPLGDRLVESIACGLNLTAAI 630
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 76.6 bits (180), Expect = 2e-14
Identities = 51/143 (35%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +3
Query: 291 PTLSKWKESDHIQAVAAGEFHSLYLSNSG-HLYSCGNNDVGQLGRQTESDNGKNPALVET 467
PT + I +V G H++ S SG +YS G D G+LG SD P ++
Sbjct: 58 PTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLF-TPLPIKA 116
Query: 468 FKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK--PKFVKGLATKN 641
I IACG H LA+ G+ SWG + GQLG LG +D P+ ++
Sbjct: 117 LHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG--LG-DTEDSLVPQKIQAFEGIR 173
Query: 642 VIQVACGAYHSVALTNSGDLYSW 710
+ VA GA H+ A+T GDLY W
Sbjct: 174 IKMVAAGAEHTAAVTEDGDLYGW 196
Score = 73.7 bits (173), Expect = 1e-13
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 2/167 (1%)
Frame = +3
Query: 216 MFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCG 395
++ WG + L + G + LV + S E + VA G H++ +S SG LY+ G
Sbjct: 193 LYGWGWGRYGNLGL-GDRTDRLVPERVTSTGGEK--MSMVACGWRHTISVSYSGALYTYG 249
Query: 396 NNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQ- 572
+ GQLG D+ P +E + IS I+ G +H++A+ G+ + WG + GQ
Sbjct: 250 WSKYGQLGHGDLEDH-LIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQV 308
Query: 573 -LGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+GNNL Q P V+ + V+QV+CG H++A+T ++++W
Sbjct: 309 GVGNNLD---QCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAW 352
Score = 65.7 bits (153), Expect = 3e-11
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Frame = +3
Query: 333 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQH 512
++AG HS+ L + + S G + GQLG ++++ +P + I ++ CG H
Sbjct: 20 ISAGASHSVALLSGDIVCSWGRGEDGQLG-HGDAEDRPSPTQLSALDGHQIVSVTCGADH 78
Query: 513 SLAIDEWG-QPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTN 689
++A + G + +SWG G+LG+ + P +K L + Q+ACG H +A+T
Sbjct: 79 TVAYSQSGMEVYSWGWGDFGRLGHG-NSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTM 137
Query: 690 SGDLYSW 710
G++ SW
Sbjct: 138 EGEVQSW 144
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/103 (31%), Positives = 53/103 (51%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
I ++ G H++ L++ G LY G N GQ+G D +P V D + ++CG
Sbjct: 278 ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC-SPVQVRFPDDQKVVQVSCG 336
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLA 632
+H+LA+ E F+WG + GQLG ++ PK ++ L+
Sbjct: 337 WRHTLAVTERNNVFAWGRGTNGQLGIGESVD-RNFPKIIEALS 378
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 75.4 bits (177), Expect = 4e-14
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 7/136 (5%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
+ +V+ G F ++ L+ G L++ G N +LGR ++ G P V + + I+ IACG
Sbjct: 195 VASVSCGGFFTMALTKEGQLWNWGANSNYELGRG-DNLGGWEPMPVPSLEGVRITQIACG 253
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVA- 680
HSLA+ E G+ SWG GQLG++ Q P ++ LA K ++ +A G S A
Sbjct: 254 GYHSLALTEEGKVLSWGHGGHGQLGSS-SLRNQKVPTEIEALADKKIVFIASGGSSSAAI 312
Query: 681 ------LTNSGDLYSW 710
LT+ G+L+ W
Sbjct: 313 TGWDWFLTDGGELWMW 328
Score = 73.3 bits (172), Expect = 1e-13
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Frame = +3
Query: 282 VIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALV 461
V P L+ E I+ +A G HS+ L++ G +++ G G LG + + P V
Sbjct: 71 VFVPNLNPLFEEHSIRCIALGGLHSVALTHQGDVFTWGYGGFGALGHKVYTRE-LVPRRV 129
Query: 462 ETFKDCTISTIACGLQHSLAIDEWGQPFSWG-SDSMGQLGNNLGAHAQD-----KPKFVK 623
+ DC IS IA H+ AI E G+ + WG + G+LG G + P VK
Sbjct: 130 DDSWDCKISAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVK 189
Query: 624 GLATKNVIQVACGAYHSVALTNSGDLYSW 710
L T V V+CG + ++ALT G L++W
Sbjct: 190 AL-TVPVASVSCGGFFTMALTKEGQLWNW 217
Score = 61.7 bits (143), Expect = 5e-10
Identities = 41/126 (32%), Positives = 62/126 (49%)
Frame = +3
Query: 333 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQH 512
++ G FHS L+ G L+ G D G+LG E+ P L F++ +I IA G H
Sbjct: 37 ISCGLFHS-GLTIDGDLWIWGKGDGGRLGFGQENSVFV-PNLNPLFEEHSIRCIALGGLH 94
Query: 513 SLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNS 692
S+A+ G F+WG G LG+ + + P+ V + +A H+ A+T S
Sbjct: 95 SVALTHQGDVFTWGYGGFGALGHKVYTR-ELVPRRVDDSWDCKISAIATSGTHTAAITES 153
Query: 693 GDLYSW 710
G+LY W
Sbjct: 154 GELYMW 159
Score = 51.2 bits (117), Expect = 7e-07
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 13/172 (7%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
+++ WG +++EL G + P S E I +A G +HSL L+ G + S
Sbjct: 213 QLWNWGANSNYELG-RGDNLGGWEPMPVPSL--EGVRITQIACGGYHSLALTEEGKVLSW 269
Query: 393 GNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEW-------GQPFSW 551
G+ GQLG + N K P +E D I IA G S AI W G+ + W
Sbjct: 270 GHGGHGQLG-SSSLRNQKVPTEIEALADKKIVFIASGGSSSAAITGWDWFLTDGGELWMW 328
Query: 552 GSDSMGQLGNNLGAHAQDKPKFVKGLATKN------VIQVACGAYHSVALTN 689
G+ QLG Q P V L ++ VI ++ GA H++ L +
Sbjct: 329 GNAKDFQLGVPGLPEIQTTPVEVNFLTEEDECQPHKVISISIGASHALCLVS 380
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 74.1 bits (174), Expect = 8e-14
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Frame = +3
Query: 321 HIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIAC 500
+I+A++ G HS ++++G L + G GQ G +D + P V K + ++A
Sbjct: 311 YIKAISCGGRHSAAITDAGGLITFGWGLYGQCGHGNTNDQLR-PMAVSEVKSVRMESVAA 369
Query: 501 GLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKG--LATKNVIQVACGAYHS 674
GL H++ I G+ +++G + GQLG HA+ P+ + G L K+ V+CGA HS
Sbjct: 370 GLWHTICISSDGKVYAFGGNQFGQLGTGTD-HAEILPRLLDGQNLEGKHAKAVSCGARHS 428
Query: 675 VALTNSGDLYSW 710
L G L W
Sbjct: 429 AVLAEDGQLLCW 440
Score = 64.9 bits (151), Expect = 5e-11
Identities = 45/140 (32%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Frame = +3
Query: 285 IKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGK-NPALV 461
++P +S +++VAAG +H++ +S+ G +Y+ G N GQLG T +D+ + P L+
Sbjct: 351 LRPMAVSEVKSVRMESVAAGLWHTICISSDGKVYAFGGNQFGQLG--TGTDHAEILPRLL 408
Query: 462 --ETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLG-AHAQDKPKFVKGLA 632
+ + ++CG +HS + E GQ WG + GQLG LG + ++ P V+ L
Sbjct: 409 DGQNLEGKHAKAVSCGARHSAVLAEDGQLLCWGWNKYGQLG--LGDTNDRNIPTQVQ-LD 465
Query: 633 TKNVIQVACGAYHSVALTNS 692
+ +VACG +H++ L +S
Sbjct: 466 GCRLRKVACGWWHTLLLGDS 485
Score = 36.3 bits (80), Expect = 0.020
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 501 GLQHSLAIDEWGQPFSWGS-DSMGQLGNNLGAHAQDKPKFVKGLATKN-VIQVACGAYHS 674
G ++AI E G+ +WGS D GQ G H + F L T+ V+Q + G H
Sbjct: 60 GCGFAMAISEKGKLITWGSTDDEGQSYVASGKHGETPEPFP--LPTEAPVVQASSGWAHC 117
Query: 675 VALTNSGDLYSW 710
+T +G+ ++W
Sbjct: 118 AVVTETGEAFTW 129
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 74.1 bits (174), Expect = 8e-14
Identities = 35/87 (40%), Positives = 50/87 (57%)
Frame = +3
Query: 450 PALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL 629
P +E+ IACG H++ + + G+ FSWG G+LG+ L AQ KPKF+ +
Sbjct: 278 PKALESTIVLDAQNIACGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQ-KPKFISSV 336
Query: 630 ATKNVIQVACGAYHSVALTNSGDLYSW 710
+ACG +H+ A+T SGDLYSW
Sbjct: 337 RGLGFKSLACGDFHTCAITQSGDLYSW 363
Score = 70.9 bits (166), Expect = 8e-13
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Frame = +3
Query: 174 ANSSY*KKLQNYKKMFCWGNA-THHELCIDGSQITDLVIKPTLSKWKESDHI---QAVAA 341
++ SY + +F WG + + L G+ + L K ES + Q +A
Sbjct: 235 SHGSYHEDFDALGDVFVWGESISDGVLSGTGNSLNSTTEDALLPKALESTIVLDAQNIAC 294
Query: 342 GEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLA 521
G+ H++ ++ G ++S G G+LG E+D K P + + + ++ACG H+ A
Sbjct: 295 GKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQK-PKFISSVRGLGFKSLACGDFHTCA 353
Query: 522 IDEWGQPFSWGSDSMGQLGNNLGAHAQDK----PKFVKG-LATKNVIQVACGAYHSVALT 686
I + G +SWG G +L H + PK V G L V VACG +H+ +
Sbjct: 354 ITQSGDLYSWGD---GTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPWHTAVVA 410
Query: 687 NSGDLYSW 710
+SG L+++
Sbjct: 411 SSGQLFTF 418
Score = 63.7 bits (148), Expect = 1e-10
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Frame = +3
Query: 366 SNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEW--GQ 539
S+ G +++ G+ + GQLG ++D P V + + I +ACG HSL + G
Sbjct: 475 SSRGQVFTWGDGEKGQLGHG-DNDTKLLPECVISLTNENICQVACG--HSLTVSRTSRGH 531
Query: 540 PFSWGSDSMGQLGNNLGAHAQDKPKFVKG-LATKNVIQVACGAYHSVALTNSGDLYSW 710
++ GS + GQLGN + P+ V+G + +V ++ACG+YH LT+ ++Y+W
Sbjct: 532 VYTMGSTAYGQLGNPTAKG--NFPERVEGDIVEASVEEIACGSYHVAVLTSKSEIYTW 587
Score = 61.7 bits (143), Expect = 5e-10
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
++F WG+ +L G T L+ + +S E+ I VA G ++ ++ GH+Y+
Sbjct: 479 QVFTWGDGEKGQLG-HGDNDTKLLPECVISLTNEN--ICQVACGHSLTVSRTSRGHVYTM 535
Query: 393 GNNDVGQLGRQTESDNGKNPALVE-TFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMG 569
G+ GQLG T G P VE + ++ IACG H + + ++WG G
Sbjct: 536 GSTAYGQLGNPTA--KGNFPERVEGDIVEASVEEIACGSYHVAVLTSKSEIYTWGKGLNG 593
Query: 570 QLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 665
QLG+ + +P V L K V + CG+
Sbjct: 594 QLGHG-NVENKREPAVVGFLREKQVKAITCGS 624
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 324 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG 503
++ +A G +H L++ +Y+ G GQLG +N + PA+V ++ + I CG
Sbjct: 565 VEEIACGSYHVAVLTSKSEIYTWGKGLNGQLGHGNV-ENKREPAVVGFLREKQVKAITCG 623
Query: 504 LQHSLAI 524
+ I
Sbjct: 624 SNFTAVI 630
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 72.1 bits (169), Expect = 3e-13
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
K+F WG+ L G + +KPT VA G ++ L+ SG +Y+
Sbjct: 462 KLFTWGDGDKSRL---GHGDKEPRLKPTCVSALIDHTFHRVACGHSLTVGLTTSGKVYTM 518
Query: 393 GNNDVGQLGRQTESDNGKNPALVET--FKDCTISTIACGLQHSLAIDEWGQPFSWGSDSM 566
G+ GQLG +GK P LVE KDC + IACG H + + F+WG +
Sbjct: 519 GSTVYGQLGNPNA--DGKLPCLVEDKLTKDC-VEEIACGAYHVAVLTSRNEVFTWGKGAN 575
Query: 567 GQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
G+LG+ + P V L ++V +ACG+ + A+
Sbjct: 576 GRLGHG-DVEDRKAPTLVDALKERHVKNIACGSNFTAAI 613
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/105 (30%), Positives = 62/105 (59%)
Frame = +3
Query: 396 NNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQL 575
+ ++G LG +++ P +E+ + IACG++H+ + G+ F+WG S G+L
Sbjct: 248 DKNIGYLGSRSDV---LIPKPLESNVVLDVHHIACGVKHAALVSRQGEVFTWGEASGGRL 304
Query: 576 GNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
G+ +G P+ ++ LA ++ VACG +H+ A+T +G++Y+W
Sbjct: 305 GHGMGKDVTG-PQLIESLAATSIDFVACGEFHTCAVTMTGEIYTW 348
Score = 66.5 bits (155), Expect = 2e-11
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Frame = +3
Query: 351 HSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDE 530
HS +SG L++ G+ D +LG + K P V D T +ACG ++ +
Sbjct: 453 HSSSSVSSGKLFTWGDGDKSRLGHGDKEPRLK-PTCVSALIDHTFHRVACGHSLTVGLTT 511
Query: 531 WGQPFSWGSDSMGQLGNNLGAHAQDK-PKFVKGLATKNVI-QVACGAYHSVALTNSGDLY 704
G+ ++ GS GQLGN +A K P V+ TK+ + ++ACGAYH LT+ +++
Sbjct: 512 SGKVYTMGSTVYGQLGN---PNADGKLPCLVEDKLTKDCVEEIACGAYHVAVLTSRNEVF 568
Query: 705 SW 710
+W
Sbjct: 569 TW 570
Score = 64.5 bits (150), Expect = 7e-11
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Frame = +3
Query: 261 GSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDN 440
GS+ L+ KP S H +A G H+ +S G +++ G G+LG D
Sbjct: 255 GSRSDVLIPKPLESNVVLDVH--HIACGVKHAALVSRQGEVFTWGEASGGRLGHGMGKDV 312
Query: 441 GKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSW--GSDSMGQLGNNLGAHAQDKPK 614
P L+E+ +I +ACG H+ A+ G+ ++W G+ + G LG+ + PK
Sbjct: 313 -TGPQLIESLAATSIDFVACGEFHTCAVTMTGEIYTWGDGTHNAGLLGHGTDV-SHWIPK 370
Query: 615 FVKG-LATKNVIQVACGAYHSVALTNSGDLYSW 710
+ G L + V+CG +H+ +T++G L+++
Sbjct: 371 RISGPLEGLQIASVSCGPWHTALITSTGQLFTF 403
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 70.9 bits (166), Expect = 8e-13
Identities = 35/112 (31%), Positives = 59/112 (52%)
Frame = +3
Query: 375 GHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWG 554
G +++ G G +T + P +E+ + I CG++H + G+ F+WG
Sbjct: 217 GEVWTEGILPDGTASNETVKTDVLTPRPLESNVVLDVHQIVCGVRHVALVTRQGEVFTWG 276
Query: 555 SDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+ G+LG+ + +PK V+ LA N+ VACG YH+ ++ SGDL+SW
Sbjct: 277 EEVGGRLGHGIQVDIS-RPKLVEFLALTNIDFVACGEYHTCVVSTSGDLFSW 327
Score = 65.7 bits (153), Expect = 3e-11
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Frame = +3
Query: 210 KKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYS 389
+K+F WG+ + L G++ T L+ PT + +A G ++ L+ SGH+++
Sbjct: 439 RKLFTWGDGDKNRLG-HGNKETYLL--PTCVSSLIDYNFHKIACGHTFTVALTTSGHVFT 495
Query: 390 CGNNDVGQLGRQTESDNGKNPALVET-FKDCTISTIACGLQHSLAIDEWGQPFSWGSDSM 566
G GQLG +GK P LV+ + IACG H + + F+WG +
Sbjct: 496 MGGTAHGQLGNSIS--DGKLPCLVQDRLVGEFVEEIACGAHHVAVLTSRSEVFTWGKGAN 553
Query: 567 GQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 665
G+LG+ + P V+ L ++V ++CG+
Sbjct: 554 GRLGHG-DTEDKRTPTLVEALRDRHVKSLSCGS 585
Score = 65.3 bits (152), Expect = 4e-11
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 7/178 (3%)
Frame = +3
Query: 198 LQNYKKMFCWGNATHHELCIDGSQITDLVIKPTLS-KWKESD---HIQAVAAGEFHSLYL 365
+++ ++ WG + DG+ + V L+ + ES+ + + G H +
Sbjct: 207 IESLGDVYVWGEVWTEGILPDGTASNETVKTDVLTPRPLESNVVLDVHQIVCGVRHVALV 266
Query: 366 SNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPF 545
+ G +++ G G+LG + D + P LVE I +ACG H+ + G F
Sbjct: 267 TRQGEVFTWGEEVGGRLGHGIQVDISR-PKLVEFLALTNIDFVACGEYHTCVVSTSGDLF 325
Query: 546 SWGS--DSMGQLGNNLGAHAQDKPKFVKG-LATKNVIQVACGAYHSVALTNSGDLYSW 710
SWG ++G LG+ + PK V G L V+ VACG +HS T +G L+++
Sbjct: 326 SWGDGIHNVGLLGHGSDI-SHWIPKRVSGPLEGLQVLSVACGTWHSALATANGKLFTF 382
Score = 55.6 bits (128), Expect = 3e-08
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Frame = +3
Query: 369 NSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFS 548
+S L++ G+ D +LG + + P V + D IACG ++A+ G F+
Sbjct: 437 SSRKLFTWGDGDKNRLGHGNK-ETYLLPTCVSSLIDYNFHKIACGHTFTVALTTSGHVFT 495
Query: 549 WGSDSMGQLGNNLGAHAQDKPKFVKG-LATKNVIQVACGAYHSVALTNSGDLYSW 710
G + GQLGN++ P V+ L + V ++ACGA+H LT+ ++++W
Sbjct: 496 MGGTAHGQLGNSIS--DGKLPCLVQDRLVGEFVEEIACGAHHVAVLTSRSEVFTW 548
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +3
Query: 216 MFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCG 395
+F G H +L G+ I+D + + + ++ +A G H L++ +++ G
Sbjct: 493 VFTMGGTAHGQL---GNSISDGKLPCLVQDRLVGEFVEEIACGAHHVAVLTSRSEVFTWG 549
Query: 396 NNDVGQLGRQTESDNGKNPALVETFKDCTISTIACG--LQHSLAIDEW 533
G+LG D + P LVE +D + +++CG S+ I +W
Sbjct: 550 KGANGRLGHGDTEDK-RTPTLVEALRDRHVKSLSCGSNFTSSICIHKW 596
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 70.1 bits (164), Expect = 1e-12
Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Frame = +3
Query: 210 KKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYS 389
+K+F WG+ + L G++ T L+ PT + +A G ++ L+ SGH+++
Sbjct: 1390 RKLFTWGDGDKNRLG-HGNKETYLL--PTCVSSLIDYNFNQIACGHTFTVALTTSGHVFT 1446
Query: 390 CGNNDVGQLGRQTESDNGKNPALVET-FKDCTISTIACGLQHSLAIDEWGQPFSWGSDSM 566
G GQLG + + +GK P LV+ + I+CG H + + F+WG S
Sbjct: 1447 MGGTSHGQLG--SSNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTWGKGSN 1504
Query: 567 GQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSV 677
G+LG+ + P V+ L ++V ++CGA SV
Sbjct: 1505 GRLGHG-DKDDRKTPTLVEALRERHVKSISCGADQSV 1540
Score = 69.3 bits (162), Expect = 2e-12
Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 2/136 (1%)
Frame = +3
Query: 282 VIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGN--NDVGQLGRQTESDNGKNPA 455
V +P L ++ +I VA GE+H+ +S SG L++ G+ ++VG LG ++ +
Sbjct: 1242 VCRPKLVEFLALTNIDFVACGEYHTCAVSTSGDLFTWGDGIHNVGLLGHGSDLSHWIPKR 1301
Query: 456 LVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLAT 635
+ + + ++ACG HS G+ F++G + G LG+ + PK VK L+
Sbjct: 1302 VSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHG-DRESVSYPKEVKMLSG 1360
Query: 636 KNVIQVACGAYHSVAL 683
++VACG +H+VA+
Sbjct: 1361 LKTLKVACGVWHTVAI 1376
Score = 67.3 bits (157), Expect = 9e-12
Identities = 29/73 (39%), Positives = 47/73 (64%)
Frame = +3
Query: 492 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 671
IACG++H + G+ F+W ++ G+LG+ + +PK V+ LA N+ VACG YH
Sbjct: 1207 IACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVC-RPKLVEFLALTNIDFVACGEYH 1265
Query: 672 SVALTNSGDLYSW 710
+ A++ SGDL++W
Sbjct: 1266 TCAVSTSGDLFTW 1278
Score = 58.8 bits (136), Expect = 3e-09
Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Frame = +3
Query: 333 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQH 512
+A G H ++ G +++ G+LG + D + P LVE I +ACG H
Sbjct: 1207 IACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVCR-PKLVEFLALTNIDFVACGEYH 1265
Query: 513 SLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK----PKFVKG-LATKNVIQVACGAYHSV 677
+ A+ G F+WG D + +G L H D PK V G + V+ VACG +HS
Sbjct: 1266 TCAVSTSGDLFTWG-DGIHNVG--LLGHGSDLSHWIPKRVSGPVEGLQVLSVACGTWHSA 1322
Query: 678 ALTNSGDLYSW 710
T +G L+++
Sbjct: 1323 LATANGKLFTF 1333
Score = 51.6 bits (118), Expect = 5e-07
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Frame = +3
Query: 366 SNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPF 545
++S L++ G+ D +LG + + P V + D + IACG ++A+ G F
Sbjct: 1387 TSSRKLFTWGDGDKNRLGHGNK-ETYLLPTCVSSLIDYNFNQIACGHTFTVALTTSGHVF 1445
Query: 546 SWGSDSMGQLGNNLGAHAQDK-PKFVKG-LATKNVIQVACGAYHSVALTNSGDLYSW 710
+ G S GQLG+ +++ K P V+ L + V +++CG +H LT+ ++++W
Sbjct: 1446 TMGGTSHGQLGS---SNSDGKLPCLVQDRLVGEFVEEISCGDHHVAVLTSRSEVFTW 1499
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 645 IQVACGAYHSVALTNSGDLYSW 710
I +ACG H +T G++++W
Sbjct: 1205 IDIACGVRHIALVTRQGEVFTW 1226
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 70.1 bits (164), Expect = 1e-12
Identities = 48/146 (32%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Frame = +3
Query: 261 GSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDN 440
G TD + PT I+ VAAG +H+ S+ G +Y+ G N GQLG T D
Sbjct: 344 GQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAFGGNQFGQLG--TGCDQ 401
Query: 441 GKN-PALVET--FKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQL--GNNLGAHAQD 605
+ P L+E ++ + TI+CG +H+ I + G+ F WG + GQL G+ + +A
Sbjct: 402 AETLPKLLEAPNLENVNVKTISCGARHTAVITDEGRVFCWGWNKYGQLGIGDVIDRNAPA 461
Query: 606 KPKFVKGLATKNVIQVACGAYHSVAL 683
+ + +K KN +ACG +H++ L
Sbjct: 462 EVR-IKDCFPKN---IACGWWHTLLL 483
Score = 69.3 bits (162), Expect = 2e-12
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Frame = +3
Query: 321 HIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIAC 500
+++ +A G HS ++++G L + G GQ G Q +D+ +P V + I +A
Sbjct: 312 YVKKIACGGRHSAVITDTGALLTFGWGLYGQCG-QGSTDDELSPTCVSSLLGIRIEEVAA 370
Query: 501 GLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKG--LATKNVIQVACGAYHS 674
GL H+ G +++G + GQLG A+ PK ++ L NV ++CGA H+
Sbjct: 371 GLWHTTCASSDGDVYAFGGNQFGQLGTGCD-QAETLPKLLEAPNLENVNVKTISCGARHT 429
Query: 675 VALTNSGDLYSW 710
+T+ G ++ W
Sbjct: 430 AVITDEGRVFCW 441
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = +3
Query: 312 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIST 491
E+ +++ ++ G H+ +++ G ++ G N GQLG D PA V KDC
Sbjct: 415 ENVNVKTISCGARHTAVITDEGRVFCWGWNKYGQLGIGDVIDRNA-PAEVR-IKDCFPKN 472
Query: 492 IACGLQHSLAIDEWGQP 542
IACG H+L + GQP
Sbjct: 473 IACGWWHTLLL---GQP 486
Score = 38.3 bits (85), Expect = 0.005
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 24/169 (14%)
Frame = +3
Query: 276 DLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPA 455
DL P L I +VAAG H+L LS+ G ++ G GQLG + +P
Sbjct: 220 DLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPH 279
Query: 456 LVETFKDCTI-----------STIACGL-------------QHSLAIDEWGQPFSWGSDS 563
+ + + S + CG +HS I + G ++G
Sbjct: 280 PIPCIEPSSYGKATSSGVNMSSVVQCGRVLGSYVKKIACGGRHSAVITDTGALLTFGWGL 339
Query: 564 MGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
GQ G + P V L + +VA G +H+ ++ GD+Y++
Sbjct: 340 YGQCGQG-STDDELSPTCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAF 387
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 70.1 bits (164), Expect = 1e-12
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 9/175 (5%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
+M+ WG + L G + V P L ++ GEFH+ ++ SG LY+
Sbjct: 316 QMYSWGEESGGRL---GHGVCSYVPHPKLIDEFNGSTVELADCGEFHTCAVTASGDLYAW 372
Query: 393 GNND--VGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSM 566
G+ D G LG + + + K ++ + + I+CG H+ + G+ F++G +
Sbjct: 373 GDGDHNAGLLGLGSGASHWKPVRILGQMEGIYVKAISCGPWHTAFVTSEGKLFTFGDGTF 432
Query: 567 GQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL-------TNSGDLYSW 710
G LG+ + + P+ V+ L I+ ACG +HS A+ T+SG L++W
Sbjct: 433 GALGHG-DRISTNIPREVEALNGCRTIKAACGVWHSAAVVSVFGEATSSGKLFTW 486
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/87 (31%), Positives = 50/87 (57%)
Frame = +3
Query: 450 PALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL 629
P ++++ +I+CG +++ + + GQ +SWG +S G+LG+ + ++ PK +
Sbjct: 287 PKVLKSHVALDAQSISCGTNYAVLVTKQGQMYSWGEESGGRLGHGVCSYV-PHPKLIDEF 345
Query: 630 ATKNVIQVACGAYHSVALTNSGDLYSW 710
V CG +H+ A+T SGDLY+W
Sbjct: 346 NGSTVELADCGEFHTCAVTASGDLYAW 372
Score = 61.3 bits (142), Expect = 6e-10
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
Frame = +3
Query: 243 HELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGR 422
H+ S +TD + L D Q+++ G +++ ++ G +YS G G+LG
Sbjct: 272 HKSGSSSSLMTDSFLPKVLKSHVALD-AQSISCGTNYAVLVTKQGQMYSWGEESGGRLGH 330
Query: 423 QTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSW--GSDSMGQLGNNLGAH 596
S +P L++ F T+ CG H+ A+ G ++W G + G LG GA
Sbjct: 331 GVCS-YVPHPKLIDEFNGSTVELADCGEFHTCAVTASGDLYAWGDGDHNAGLLGLGSGAS 389
Query: 597 AQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+ + + V ++CG +H+ +T+ G L+++
Sbjct: 390 HWKPVRILGQMEGIYVKAISCGPWHTAFVTSEGKLFTF 427
Score = 57.6 bits (133), Expect = 8e-09
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
K+F WG+ L G + + P+ ++ Q VA G+ ++ LS SG +Y+
Sbjct: 482 KLFTWGDGDDGRL---GHGDIECRLIPSCVTELDTTSFQQVACGQSITVALSMSGQVYAM 538
Query: 393 GNNDVGQLGRQTESDNGKNPALVET-FKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMG 569
G D D + P+ +E + +ACG H ++ + ++WG S G
Sbjct: 539 GTADPSH-------DIVRAPSCIEGGLGKSFVQEVACGFHHIAVLNSKAEVYTWGKGSNG 591
Query: 570 QLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
QLG+ + P VK L K V +V CG+ ++ +
Sbjct: 592 QLGHG-DTEYRCMPTLVKALKGKQVRKVVCGSNYTATI 628
Score = 44.4 bits (100), Expect = 8e-05
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Frame = +3
Query: 366 SNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPF 545
++SG L++ G+ D G+LG + + P+ V + +ACG ++A+ GQ +
Sbjct: 478 TSSGKLFTWGDGDDGRLGHG-DIECRLIPSCVTELDTTSFQQVACGQSITVALSMSGQVY 536
Query: 546 SWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQ-VACGAYHSVALTNSGDLYSW 710
+ G+ P ++G K+ +Q VACG +H L + ++Y+W
Sbjct: 537 AMGTADPSH-------DIVRAPSCIEGGLGKSFVQEVACGFHHIAVLNSKAEVYTW 585
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +3
Query: 483 ISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL-ATKNVIQVAC 659
+ IACG++H+ + G+ F+WG +S G+LG+ +G P+ V+ L AT +V VAC
Sbjct: 283 VHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDV-FHPRLVESLTATSSVDFVAC 341
Query: 660 GAYHSVALTNSGDLYSW 710
G +H+ A+T +G+LY+W
Sbjct: 342 GEFHTCAVTLAGELYTW 358
Score = 68.1 bits (159), Expect = 5e-12
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 1/158 (0%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSC 392
K+F WG+ + L G D +KPT + +A G ++ L+ SG +++
Sbjct: 473 KLFTWGDGDKNRL---GHGDKDPRLKPTCVPALIDYNFHKIACGHSLTVGLTTSGQVFTM 529
Query: 393 GNNDVGQLGRQTESDNGKNPALVET-FKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMG 569
G+ GQLG ++D GK P LVE + I+CG H A+ + ++WG + G
Sbjct: 530 GSTVYGQLGN-LQTD-GKLPCLVEDKLASEFVEEISCGAYHVAALTSRNEVYTWGKGANG 587
Query: 570 QLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
+LG+ + P V+ L ++V +ACG+ ++ A+
Sbjct: 588 RLGHG-DLEDRKVPTIVEALKDRHVKYIACGSNYTAAI 624
Score = 66.9 bits (156), Expect = 1e-11
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Frame = +3
Query: 213 KMFCWGNATHHELCIDGSQITDLVIKPTL-SKWKESDHIQAVAAGEFHSLYLSNSGHLYS 389
++F WG + L G I V P L + + VA GEFH+ ++ +G LY+
Sbjct: 301 EIFTWGEESGGRL---GHGIGKDVFHPRLVESLTATSSVDFVACGEFHTCAVTLAGELYT 357
Query: 390 CGN--NDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDS 563
G+ ++VG LG ++ + + + + +++++CG H+ I +G+ F++G +
Sbjct: 358 WGDGTHNVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCGPWHTALITSYGRLFTFGDGT 417
Query: 564 MGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVAL 683
G LG+ P+ V+ L+ I V+CG +H+ A+
Sbjct: 418 FGVLGHG-DKETVQYPREVESLSGLRTIAVSCGVWHTAAV 456
Score = 66.5 bits (155), Expect = 2e-11
Identities = 39/114 (34%), Positives = 59/114 (51%)
Frame = +3
Query: 369 NSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFS 548
+SG L++ G+ D +LG + D P V D IACG ++ + GQ F+
Sbjct: 470 SSGKLFTWGDGDKNRLGHG-DKDPRLKPTCVPALIDYNFHKIACGHSLTVGLTTSGQVFT 528
Query: 549 WGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
GS GQLGN L + LA++ V +++CGAYH ALT+ ++Y+W
Sbjct: 529 MGSTVYGQLGN-LQTDGKLPCLVEDKLASEFVEEISCGAYHVAALTSRNEVYTW 581
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 609 PKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
PK ++ +V Q+ACG H+ +T G++++W
Sbjct: 272 PKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTW 305
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 67.3 bits (157), Expect = 9e-12
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
Frame = +3
Query: 174 ANSSY*KKLQNYKKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFH 353
A Y L N K++ G + L GS+ T V + ++ + V+A + H
Sbjct: 117 ATGKYHTLLINNSKVYSCGVSLSGVLA-HGSETTQCVAFTPI-EFPFPAQVAQVSATQNH 174
Query: 354 SLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEW 533
S ++ SG + +CG+N G S P LVE K +A GL ++ +
Sbjct: 175 SAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSRE 234
Query: 534 GQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKN-VIQVACGAYHSVALTNSGDLYSW 710
G ++ GS++ GQLG+ + PK V+ L T V+Q+A G + +A+T G +YS+
Sbjct: 235 GHAYTCGSNTHGQLGHG-DTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSF 293
Score = 57.6 bits (133), Expect = 8e-09
Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 3/182 (1%)
Frame = +3
Query: 174 ANSSY*KKLQNYKKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESD-HIQAVAAGEF 350
A SY + ++ +G+ ++ C+ + D + + +K HI V+AG+
Sbjct: 276 AGPSYVLAVTQDGSVYSFGSGSN--FCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDE 333
Query: 351 HSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDE 530
H++ L ++G +Y+ G G LG E+D P ++ +C + + + + E
Sbjct: 334 HAVALDSNGRVYTWGKGYCGALGHGDENDK-ITPQVLVNLNNCLAVQVCARKRKTFVLVE 392
Query: 531 WGQPFSWGSDSMGQLG-NNLGAHAQD-KPKFVKGLATKNVIQVACGAYHSVALTNSGDLY 704
G + +G G LG + G + +P+ ++ L V QV+ G YH++ +T G ++
Sbjct: 393 GGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIF 452
Query: 705 SW 710
+
Sbjct: 453 GF 454
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 2/163 (1%)
Frame = +3
Query: 228 GNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDV 407
G+ TH +L D + + K + +AAG + L ++ G +YS G+
Sbjct: 241 GSNTHGQL--GHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSN 298
Query: 408 GQLGRQTESDNGKNPALVETF--KDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGN 581
LG + D P +++ F K I ++ G +H++A+D G+ ++WG G LG+
Sbjct: 299 FCLGHGEQQDE-LQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGH 357
Query: 582 NLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+ + P+ + L +QV + L G LY +
Sbjct: 358 G-DENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGF 399
Score = 35.5 bits (78), Expect = 0.035
Identities = 12/53 (22%), Positives = 31/53 (58%)
Frame = +3
Query: 270 ITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQT 428
++D V++P + + + + V+ G +H++ ++ G ++ G+N+ QLG +
Sbjct: 414 VSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDS 466
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 67.3 bits (157), Expect = 9e-12
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
Frame = +3
Query: 174 ANSSY*KKLQNYKKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFH 353
A Y L N K++ G + L GS+ T V + ++ + V+A + H
Sbjct: 117 ATGKYHTLLINNSKVYSCGVSLSGVLA-HGSETTQCVAFTPI-EFPFPAQVAQVSATQNH 174
Query: 354 SLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEW 533
S ++ SG + +CG+N G S P LVE K +A GL ++ +
Sbjct: 175 SAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSRE 234
Query: 534 GQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKN-VIQVACGAYHSVALTNSGDLYSW 710
G ++ GS++ GQLG+ + PK V+ L T V+Q+A G + +A+T G +YS+
Sbjct: 235 GHAYTCGSNTHGQLGHG-DTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSF 293
Score = 57.6 bits (133), Expect = 8e-09
Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 3/182 (1%)
Frame = +3
Query: 174 ANSSY*KKLQNYKKMFCWGNATHHELCIDGSQITDLVIKPTLSKWKESD-HIQAVAAGEF 350
A SY + ++ +G+ ++ C+ + D + + +K HI V+AG+
Sbjct: 276 AGPSYVLAVTQDGSVYSFGSGSN--FCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDE 333
Query: 351 HSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDE 530
H++ L ++G +Y+ G G LG E+D P ++ +C + + + + E
Sbjct: 334 HAVALDSNGRVYTWGKGYCGALGHGDENDK-ITPQVLVNLNNCLAVQVCARKRKTFVLVE 392
Query: 531 WGQPFSWGSDSMGQLG-NNLGAHAQD-KPKFVKGLATKNVIQVACGAYHSVALTNSGDLY 704
G + +G G LG + G + +P+ ++ L V QV+ G YH++ +T G ++
Sbjct: 393 GGLLYGFGWMGFGSLGFPDRGVSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIF 452
Query: 705 SW 710
+
Sbjct: 453 GF 454
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 2/163 (1%)
Frame = +3
Query: 228 GNATHHELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDV 407
G+ TH +L D + + K + +AAG + L ++ G +YS G+
Sbjct: 241 GSNTHGQL--GHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSN 298
Query: 408 GQLGRQTESDNGKNPALVETF--KDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGN 581
LG + D P +++ F K I ++ G +H++A+D G+ ++WG G LG+
Sbjct: 299 FCLGHGEQQDE-LQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGH 357
Query: 582 NLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
+ + P+ + L +QV + L G LY +
Sbjct: 358 G-DENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGF 399
Score = 35.5 bits (78), Expect = 0.035
Identities = 12/53 (22%), Positives = 31/53 (58%)
Frame = +3
Query: 270 ITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQT 428
++D V++P + + + + V+ G +H++ ++ G ++ G+N+ QLG +
Sbjct: 414 VSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDS 466
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 63.3 bits (147), Expect = 2e-10
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Frame = +3
Query: 219 FCWGNATH--HELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLS---NSGHL 383
F WGN H+ ++ D+ +P L + +Q +AAG + L L+ N +
Sbjct: 273 FSWGNDGRLGHQ-----TEAADVEPRPLLGPLENVPVVQ-IAAGYCYLLALACQPNGMSV 326
Query: 384 YSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIS--TIACGLQHSLAIDEWGQPFSWGS 557
YS G G+LG + +D K P ++E F+ + +A G H+ + + G+ +WG
Sbjct: 327 YSVGCGLGGKLGHGSRTDE-KYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGW 385
Query: 558 DSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
G LG+ + PK V+GL+ + VA G Y + +++ GD+YS+
Sbjct: 386 GRYGCLGHG-NEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSF 435
Score = 57.6 bits (133), Expect = 8e-09
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = +3
Query: 327 QAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGR-QTESDNGKNPALVETFKDCTISTIACG 503
QAVA G HS+ +++ G +Y+ G N+ GQLG TE + P V + + I A G
Sbjct: 147 QAVA-GPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQP--VRSLQGVRIIQAAAG 203
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVA 680
++ I + G+ ++ G +S G+ G P+ V L V+Q A G Y +
Sbjct: 204 AARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAV 263
Query: 681 LTNSGDLYSW 710
L+ G +Y++
Sbjct: 264 LSREGKVYTF 273
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +3
Query: 486 STIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKF--VKGLATKNVIQVAC 659
S G HS+A+ G+ +++G ++ GQLG+ H +D+ + V+ L +IQ A
Sbjct: 146 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGH---GHTEDEARIQPVRSLQGVRIIQAAA 202
Query: 660 GAYHSVALTNSGDLYS 707
GA ++ +++ G +Y+
Sbjct: 203 GAARTMLISDDGKVYA 218
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 63.3 bits (147), Expect = 2e-10
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Frame = +3
Query: 219 FCWGNATH--HELCIDGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLS---NSGHL 383
F WGN H+ ++ D+ +P L + +Q +AAG + L L+ N +
Sbjct: 173 FSWGNDGRLGHQ-----TEAADVEPRPLLGPLENVPVVQ-IAAGYCYLLALACQPNGMSV 226
Query: 384 YSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIS--TIACGLQHSLAIDEWGQPFSWGS 557
YS G G+LG + +D K P ++E F+ + +A G H+ + + G+ +WG
Sbjct: 227 YSVGCGLGGKLGHGSRTDE-KYPRVIEQFQILNLQPRVVAAGAWHAAVVGQDGRVCTWGW 285
Query: 558 DSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
G LG+ + PK V+GL+ + VA G Y + +++ GD+YS+
Sbjct: 286 GRYGCLGHG-NEECESVPKVVEGLSHVKAVHVATGDYTTFVVSDDGDVYSF 335
Score = 57.6 bits (133), Expect = 8e-09
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Frame = +3
Query: 327 QAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGR-QTESDNGKNPALVETFKDCTISTIACG 503
QAVA G HS+ +++ G +Y+ G N+ GQLG TE + P V + + I A G
Sbjct: 47 QAVA-GPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEARIQP--VRSLQGVRIIQAAAG 103
Query: 504 LQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVA 680
++ I + G+ ++ G +S G+ G P+ V L V+Q A G Y +
Sbjct: 104 AARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGNYFTAV 163
Query: 681 LTNSGDLYSW 710
L+ G +Y++
Sbjct: 164 LSREGKVYTF 173
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Frame = +3
Query: 486 STIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKF--VKGLATKNVIQVAC 659
S G HS+A+ G+ +++G ++ GQLG+ H +D+ + V+ L +IQ A
Sbjct: 46 SQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGH---GHTEDEARIQPVRSLQGVRIIQAAA 102
Query: 660 GAYHSVALTNSGDLYS 707
GA ++ +++ G +Y+
Sbjct: 103 GAARTMLISDDGKVYA 118
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 62.5 bits (145), Expect = 3e-10
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Frame = +3
Query: 288 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVET 467
+PT+ I AAG H++ +S+ G G N GQLG + + + + T
Sbjct: 100 RPTVVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQLGLGSAKNGFVSVEVEST 159
Query: 468 FKDCTIS----TIACGLQHS--LAIDEWGQPFSWGSDSMGQLGNN-------------LG 590
C +S +ACG + L+ E + G GQLG+ L
Sbjct: 160 PLPCVVSDEVTNVACGADFTVWLSSTEGASILTAGLPQYGQLGHGTDNEFNMKDSSVRLA 219
Query: 591 AHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 710
AQ +PK + LA + +++VACG H+VA+ +G +Y+W
Sbjct: 220 YEAQPRPKAIASLAGETIVKVACGTNHTVAVDKNGYVYTW 259
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Frame = +3
Query: 375 GHLYSCGNNDVGQLGRQTESDNGK--NPALVETFKDCTISTIA--CGLQHSLAIDEWGQP 542
G L CG +G++ + G +P + I +A C H +A+D G+
Sbjct: 20 GELLFCGATAWDIIGKRKGAMEGNLVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGRC 79
Query: 543 FSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSG 695
++WG + GQLG+ +D+P V GL+ +++ A G H+V +++ G
Sbjct: 80 YTWGRNEKGQLGHG-DMIQRDRPTVVSGLSKHKIVKAAAGRNHTVVVSDDG 129
Score = 51.2 bits (117), Expect = 7e-07
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Frame = +3
Query: 315 SDHIQAVAAGEFHSLYLSNS--GHLYSCGNNDVGQLGRQTESD-NGKN------------ 449
SD + VA G +++LS++ + + G GQLG T+++ N K+
Sbjct: 166 SDEVTNVACGADFTVWLSSTEGASILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPR 225
Query: 450 PALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL 629
P + + TI +ACG H++A+D+ G ++WG G+LG+ + P+ +
Sbjct: 226 PKAIASLAGETIVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHR-EQKDEWAPRRIDVF 284
Query: 630 ATKNVIQ----VACGAYHSVALTNSGDLYSW 710
NV+ ++ G+ +S G LY W
Sbjct: 285 QRNNVLPPNAILSAGSANSACTAGGGQLYMW 315
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Frame = +3
Query: 282 VIKPTLSKWKESDHIQAVAAG--EFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPA 455
++ PT + +I+ VA G FH + L G Y+ G N+ GQLG + P
Sbjct: 44 LVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGRCYTWGRNEKGQLGHGDMIQRDR-PT 102
Query: 456 LVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLG----NNLGAHAQDKPKFVK 623
+V I A G H++ + + GQ +G + GQLG N + + +
Sbjct: 103 VVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQLGLGSAKNGFVSVEVESTPLP 162
Query: 624 GLATKNVIQVACGAYHSVALTNS 692
+ + V VACGA +V L+++
Sbjct: 163 CVVSDEVTNVACGADFTVWLSST 185
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 546 SWGSDSMGQLGNNL-GAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDL 701
SWG G+LG G + PK V L +V+ VACG HS+ + + D+
Sbjct: 359 SWGHAQYGELGYGPNGQKSSAAPKKVDMLEGMHVMGVACGFCHSMVIVDRTDI 411
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 54.8 bits (126), Expect = 5e-08
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +3
Query: 315 SDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDC----- 479
S I ++AAGE H++ L+ G +YS G G+LG ESD P LVE
Sbjct: 15 SRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDE-LVPVLVEFPNQAEGDRI 73
Query: 480 TISTIACGLQHSLAIDEWGQPFSWGSDSMGQLG 578
I +A G HSLA+ + G + WG + GQLG
Sbjct: 74 RIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLG 106
Score = 54.0 bits (124), Expect = 9e-08
Identities = 52/184 (28%), Positives = 77/184 (41%), Gaps = 21/184 (11%)
Frame = +3
Query: 216 MFCWGNATHHELCIDGSQITDLV-IKPTLSKWKESDHIQ--AVAAGEFHSLYLSNSGHLY 386
++ WG L G + +LV + E D I+ VAAG +HSL +S+ G ++
Sbjct: 37 VYSWGRGMFGRLGT-GKESDELVPVLVEFPNQAEGDRIRIVGVAAGAYHSLAVSDDGSVW 95
Query: 387 SCGNNDVGQLGRQTE----------------SDNGKNPALVETFKDCTISTIACGLQHSL 518
G N GQLG E S + N + E D + T+ G SL
Sbjct: 96 CWGYNIYGQLGFDGENSLAPCLIKNLFERETSSSSLNDSGREVGSDLKVCTVKAGSMMSL 155
Query: 519 AIDEWGQPFSWGS--DSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNS 692
AID G + WG+ + L + P + + V++VACG H VAL
Sbjct: 156 AIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFPILDFHGRTVLKVACGDEHVVALVGP 215
Query: 693 GDLY 704
GD++
Sbjct: 216 GDIH 219
Score = 53.6 bits (123), Expect = 1e-07
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Frame = +3
Query: 318 DHIQA-VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKD---CTI 485
+H+ A V G+ H + LYS GNN GQLG + ++ P VETF T+
Sbjct: 207 EHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLG-LGDGESRARPQTVETFNQKSGLTV 265
Query: 486 STIACGLQHSLAI-----DEWGQPFSW--GSDSMGQLGNNLGAHAQDKPKFVKGLAT-KN 641
IACG H+ + G W G GQLG+ + P+ V L
Sbjct: 266 YDIACGAHHTALLTYRKETPKGPSICWTFGFGENGQLGHR-SNKSSSLPEPVSDLPEHAY 324
Query: 642 VIQVACGAYHSVALTNSGDLYSW 710
++ V CG +H+ +++ G ++SW
Sbjct: 325 LVSVDCGLFHTSVVSSEGYVWSW 347
Score = 48.4 bits (110), Expect = 5e-06
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Frame = +3
Query: 216 MFCWGNATHHELCI-DGSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLS-------N 371
++ WGN H +L + DG T ++ K + +A G H+ L+
Sbjct: 229 LYSWGNNHHGQLGLGDGESRARPQTVETFNQ-KSGLTVYDIACGAHHTALLTYRKETPKG 287
Query: 372 SGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSW 551
++ G + GQLG ++ + + + + + ++ CGL H+ + G +SW
Sbjct: 288 PSICWTFGFGENGQLGHRSNKSSSLPEPVSDLPEHAYLVSVDCGLFHTSVVSSEGYVWSW 347
Query: 552 GSD-SMGQLGN----NLGAHAQDKPKFVKGLAT--KNVIQVACGAYHSVALTNSG-DLYS 707
G + +G + + A P+ + G ++ ++ +QV+CGA H+V + + G L+S
Sbjct: 348 GMERGLGLCPDVNFTEVEAGDDSVPRKISGGSSRFRDPVQVSCGAAHTVLVVDGGYKLWS 407
Query: 708 W 710
W
Sbjct: 408 W 408
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Frame = +3
Query: 483 ISTIACGLQHSLAIDEWGQPFSWGSDSMGQLG-----NNLGAHAQDKPKFVKGLATKNVI 647
I ++A G H++A+ G +SWG G+LG + L + P +G + ++
Sbjct: 18 IISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAEGDRIR-IV 76
Query: 648 QVACGAYHSVALTNSGDLYSW 710
VA GAYHS+A+++ G ++ W
Sbjct: 77 GVAAGAYHSLAVSDDGSVWCW 97
Score = 31.9 bits (69), Expect = 0.43
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 633 TKNVIQVACGAYHSVALTNSGDLYSW 710
++ +I +A G H++ALT G +YSW
Sbjct: 15 SRKIISLAAGEAHTIALTGDGCVYSW 40
>At3g55950.1 68416.m06217 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; similar to
cytokinin-regulated kinase 1 [Nicotiana tabacum]
gi|10998537|gb|AAG25966
Length = 814
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 333 VAAGEFHSLYLSNSGHLYSCGNNDVGQL 416
++AG+ H+ L+ +G+L GNND GQL
Sbjct: 204 ISAGKSHACGLNTTGNLICIGNNDSGQL 231
>At4g34090.2 68417.m04836 expressed protein
Length = 302
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 276 DLVIKPTLSKWKESDHIQAVAAGEFHSL--YLSNSGHLYSCGNNDVGQLGRQTESDNGKN 449
DL+ + L + E DH+ A+ GEF++ G + N + ++GR E+ +
Sbjct: 173 DLLERKVLRHFDEGDHVSAMVTGEFYTKKDLFPGFGRPFVYYANILQKVGRNVEAKDAAR 232
Query: 450 PALVETFKDCTISTIACGLQHSLAIDEW 533
AL + T+ C + +I +W
Sbjct: 233 VALRSPW-----WTLGCPYEEVASIAQW 255
>At4g34090.1 68417.m04837 expressed protein
Length = 330
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Frame = +3
Query: 276 DLVIKPTLSKWKESDHIQAVAAGEFHSL--YLSNSGHLYSCGNNDVGQLGRQTESDNGKN 449
DL+ + L + E DH+ A+ GEF++ G + N + ++GR E+ +
Sbjct: 173 DLLERKVLRHFDEGDHVSAMVTGEFYTKKDLFPGFGRPFVYYANILQKVGRNVEAKDAAR 232
Query: 450 PALVETFKDCTISTIACGLQHSLAIDEW 533
AL + T+ C + +I +W
Sbjct: 233 VALRSPW-----WTLGCPYEEVASIAQW 255
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/75 (30%), Positives = 31/75 (41%)
Frame = +3
Query: 438 NGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKF 617
+G N V+ F GL S ++ G P GS GQL + L A KPK+
Sbjct: 101 SGPNSGSVKKFSGPLSQLQPTGLITSGSLGSSG-PILSGSRRSGQLDHQLSNLASSKPKY 159
Query: 618 VKGLATKNVIQVACG 662
+ + NV V G
Sbjct: 160 GSSVTSLNVDPVRVG 174
>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
polypeptide / RNA polymerase II subunit 2 (RPB135)
(RPB2) (RP140) identical to SP|P38420 DNA-directed RNA
polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
polymerase II subunit 2) {Arabidopsis thaliana}
Length = 1188
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 435 DNGKNPALVETFKDCTISTIACGLQHSLAIDEWGQPFSWGSDS-MGQLGNNL 587
DNGK L K TI GL++SLA WGQ + G+ + + Q+ N L
Sbjct: 429 DNGKEVNLQFAIK---AKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRL 477
>At3g63510.1 68416.m07154 nitrogen regulation family protein
contains Pfam domain PF01207: Dihydrouridine synthase
(Dus); similar to (SP:P45672) NIFR3-like protein
(SP:P45672) [Azospirillum brasilense]
Length = 404
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 293 GLDNQISYL*TVDAQFMMSCIAPTKHFLV 207
G+DN SY D + +S ++PT+HF+V
Sbjct: 172 GVDNHDSYDELCDFIYKVSTLSPTRHFIV 200
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 626 PFDKFRFVLSMSAKVIAKLPHT 561
PF KFR S+SA+V+AK HT
Sbjct: 1013 PFAKFRVGQSISARVVAKPCHT 1034
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,512,334
Number of Sequences: 28952
Number of extensions: 326811
Number of successful extensions: 1030
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -