Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n03
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)               30   2.2  
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_4469| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_13336| Best HMM Match : Pox_A32 (HMM E-Value=0.049)                 29   3.8  
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       28   6.7  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                28   6.7  
SB_55494| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_44950| Best HMM Match : rve (HMM E-Value=3.8e-12)                   28   8.8  
SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               28   8.8  

>SB_45992| Best HMM Match : HCO3_cotransp (HMM E-Value=0)
          Length = 890

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +2

Query: 269 AVGQVGAIYSKVKGAHSLLEWALSTAEAGVVLAATTAAPYV----SAPLAVGDAKV 424
           A+   G +Y K KG   + E  +STA +GV+ A     P +    + PL V +  V
Sbjct: 440 AISFGGLLYKKTKGWMGVAEMIVSTALSGVIFALFAGQPLIIIGATGPLLVFETNV 495


>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1450

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 440  HLERRVPLVTEQPKVIVETTKQAVLSK 520
            HL+ R PL++ +P + + TT+Q+ ++K
Sbjct: 1304 HLDTRAPLISARPCIAMSTTQQSKITK 1330


>SB_4469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 612 TRCSPPPTGRRRCTGWTTELPM-LC 683
           T C+ P TG  +CTG T  LP+ LC
Sbjct: 46  TECARPWTGHSQCTGHTDRLPVSLC 70


>SB_49036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 269 AVGQVGAIYSKVKGAHSLLEWALSTAEAGVVLAATTAAPYVSAPLAV 409
           A+ +V  + +   G  S+  W+L     G+ ++  TAAP  +A L V
Sbjct: 84  AIDKVAGVIATGGGDSSIRLWSLQDLSNGLTISTETAAPSANASLPV 130


>SB_13336| Best HMM Match : Pox_A32 (HMM E-Value=0.049)
          Length = 960

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 440 HLERRVPLVTEQPKVIVETTKQAVLSK 520
           HL+RR P ++ +P + + TT+Q+ ++K
Sbjct: 871 HLDRRAPPISARPCIAMSTTQQSKITK 897


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 453 LRSR*SMAAATLASPTARGADTYGAAVVAARTTPASAVD 337
           LR+  +M A+ LAS  A+   +Y  ++ ++  TPA+ +D
Sbjct: 569 LRTLINMLASDLASSIAQSGHSYAVSLASSSLTPAARLD 607


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 448 TQSATCHGTT*SHSGDYQTSCAIENIPS 531
           TQS+T H +T  H G+ QT+ +I +I S
Sbjct: 241 TQSSTSHSSTPRHHGEPQTTISITSIIS 268


>SB_55494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
 Frame = +2

Query: 398 PLAVGDAKVAAAIDHLERRVPLVTEQPKVI----VET--TKQAVLSKISPHVNKVYGARA 559
           P AV   K A  +     R P+  +  K +    V T  T  + L ++  HV K  G+ +
Sbjct: 165 PYAVTKVKRAGTLSPSLERSPVAPKTHKPLEPCFVTTCVTSISELKELIAHVQKRLGSES 224

Query: 560 VAEQRVKSLKELSWAKANALLSTAYGQKAMHGVDYGAT 673
           +  +  ++L  L+W    AL +  Y     H VD   T
Sbjct: 225 LLTKDNRALSSLAWLPV-ALQTLLYFMTCSHQVDVDIT 261


>SB_44950| Best HMM Match : rve (HMM E-Value=3.8e-12)
          Length = 489

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 440 HLERRVPLVTEQPKVIVETTKQAVLSK 520
           HLE R P ++ +P + + TT+Q+ ++K
Sbjct: 77  HLETRAPPISARPCIAMSTTQQSKITK 103


>SB_32076| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 2352

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 440  HLERRVPLVTEQPKVIVETTKQAVLSK 520
            HLE R P ++ +P + + TT+Q+ ++K
Sbjct: 1933 HLETRAPPISARPCIAMSTTQQSKITK 1959


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,107,788
Number of Sequences: 59808
Number of extensions: 391514
Number of successful extensions: 1272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)