Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n03
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    32   0.48 
Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF067944-1|AAC17672.1|  237|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    28   5.9  
U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = -2

Query: 492  STMTLGCSVTSGTLRSR*SMAAATLASPTARGADTYGAAVVAARTTPASAVDRA--HSRS 319
            +T TL C  ++    S  S  +  + +PT     + G       T P + V     +S  
Sbjct: 1213 TTATLTCLNSATLTGSSYSSCSNGVWTPTLGSCTSSGTGTGPCYTPPLTPVGATLTYSSG 1272

Query: 318  EWAPLTFE*IAP-TCPTAASTVGIAIAFCTD--WS--CGNVVGAELTSVAISET 172
             +AP T    A  +CP   + +G +I++CT+  WS   G+  G+ +   + + T
Sbjct: 1273 YFAPWTAGSTATMSCPAGQTVIGTSISYCTNSAWSPALGSCSGSSVGQASTTTT 1326


>Z81107-10|CAB03233.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 222 SSNLCRRQWXXXXXXXXXGRSEQFIQKSKVPT-HFSNGLYR 341
           SSNLCR            G   Q+++KS++P+ HF   L R
Sbjct: 4   SSNLCRSITASRGKHALTGDDYQYLEKSEIPSYHFQKSLRR 44


>Z73103-11|CAA97431.1|  646|Caenorhabditis elegans Hypothetical
           protein R07H5.2a protein.
          Length = 646

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 222 SSNLCRRQWXXXXXXXXXGRSEQFIQKSKVPT-HFSNGLYR 341
           SSNLCR            G   Q+++KS++P+ HF   L R
Sbjct: 4   SSNLCRSITASRGKHALTGDDYQYLEKSEIPSYHFQKSLRR 44


>AF067944-1|AAC17672.1|  237|Caenorhabditis elegans Hypothetical
           protein K10C9.4 protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +2

Query: 110 YSFLLNSKVKILIVFFEDVNRVSEMATEVSSAPTTLPQLQSVQKAMAIPTV 262
           Y F+LN  + ILI+FF  +   + +  +VSS  +   Q  S+ + + +  +
Sbjct: 107 YIFILNILILILILFFTIIISANRIIAKVSSDLSNRNQFSSIYRLLFVQCI 157


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
 Frame = +2

Query: 206 PTTLPQLQS-VQKAMAIPTVEAAVGQVG-AIYSKVKGAHSLLEWALSTAEAGVVLAATTA 379
           P TLP L++ V +   +P +   +     +  S +  A  +   A+ T  +   +   TA
Sbjct: 301 PPTLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIFSTAVPTQSS---ILFQTA 357

Query: 380 APYVSAPLAVGDAKVAAAIDHLERRVPLVTEQPKVIVETTKQAVLSKI 523
           A  V++ ++ G++   A   HL+        QP + +  + Q ++  I
Sbjct: 358 AAAVTSAMSTGNSTPVALPHHLQGHNSAFVTQPSLTLSQSMQTIVEAI 405


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/72 (31%), Positives = 30/72 (41%)
 Frame = +2

Query: 185 ATEVSSAPTTLPQLQSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWALSTAEAGVVL 364
           +T  +SAP T   L     A    T  A     G ++    GA S    A +    G+  
Sbjct: 410 STTTTSAPAT-GSLFGTAPATTTATSAAPAASTGGLF----GASSTTTPASTAPTGGLFG 464

Query: 365 AATTAAPYVSAP 400
           AATT AP  +AP
Sbjct: 465 AATTTAPAAAAP 476


>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 417 ASPTARGADTYGAAVVAARTTPASAVDRAHSRSEWAPLTFE*IAPTCPTAAST 259
           AS +A    T          TP+SA  R+ SRS   P     ++ + P+A+ST
Sbjct: 61  ASKSATRGRTASKTPKTPSKTPSSASARSRSRSRGRPTNASRLSASTPSASST 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,750,624
Number of Sequences: 27780
Number of extensions: 284160
Number of successful extensions: 824
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)