Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n03
(724 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39520.1 68418.m04785 expressed protein predicted protein, Sy... 31 0.58
At5g45150.1 68418.m05543 ribonuclease III family protein similar... 30 1.4
At3g02890.1 68416.m00284 PHD finger protein-related contains low... 30 1.8
At4g12070.1 68417.m01919 expressed protein 29 2.4
At5g61740.1 68418.m07747 ABC transporter family protein ABC fami... 29 3.1
At5g46800.1 68418.m05766 mitochondrial carnitine/acyl carrier, p... 29 4.1
At1g06620.1 68414.m00699 2-oxoglutarate-dependent dioxygenase, p... 29 4.1
At2g43700.1 68415.m05432 lectin protein kinase family protein co... 28 5.5
At2g30830.1 68415.m03759 2-oxoglutarate-dependent dioxygenase, p... 28 5.5
At5g42280.1 68418.m05146 DC1 domain-containing protein contains ... 28 7.2
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PI... 28 7.2
>At5g39520.1 68418.m04785 expressed protein predicted protein,
Synechocystis sp., PIR:S77152
Length = 230
Score = 31.5 bits (68), Expect = 0.58
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +2
Query: 188 TEVSSAPTTLPQLQSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWALSTAEAGVVLA 367
T+V T +LQ + + M PT + +G GA+Y +G H+ L+ L T VL
Sbjct: 126 TKVLELNMTKWELQGLDRVME-PT-DFTLGVKGALYPDRRGRHTRLKGRLETT-ISFVLP 182
Query: 368 ATTAAPYVSAPLAVGDAKVAAAIDHLERRV--PLVTEQPKVIVETTK 502
+ A + +A +A +D+++ RV LV + K E K
Sbjct: 183 SVLALVPEDVRRNMANAILAGLVDNMKHRVIESLVADYSKFKYERKK 229
>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
CAF protein (RNA helicase/RNAseIII) [Arabidopsis
thaliana] GI:6102610; contains Pfam profiles PF00035:
Double-stranded RNA binding motif, PF00636 RNase3 domain
Length = 957
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 380 APYVSAPLAVGDAKVAAAIDHLERRVPLVTEQPKVIVETTKQAVLSKISPHV 535
+PYV G + +++ +P +E P TTKQ V+ K SPHV
Sbjct: 784 SPYVEPVDTKGKLFESCSVE--SSSLPTTSENPSTYEMTTKQMVVDKDSPHV 833
>At3g02890.1 68416.m00284 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 963
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +2
Query: 227 QSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWALSTAEAGVVLAATTAAPYVSAPLA 406
++V K+M+ ++ VG SKVKG+ L +W+ + + ++ PY +P
Sbjct: 405 KNVGKSMSSRCID--VGSSNCNDSKVKGSKQLKDWSTEANPSASISRGNSSIPYAKSPRD 462
Query: 407 VGD 415
+ D
Sbjct: 463 LKD 465
>At4g12070.1 68417.m01919 expressed protein
Length = 483
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +2
Query: 533 VNKVYGARAVAEQRVKSLKELSWAKANALLSTAYGQKAMHGVDYGATYAMQLLDHYLPPV 712
+ K+ G A A SL +LS N ++ YG + HGVD G A++L + P+
Sbjct: 235 LTKISGETASATVNTTSLSDLS----NLANTSLYGFEDYHGVDIGVVRAVRL---WFAPL 287
Query: 713 GAQ 721
G +
Sbjct: 288 GVE 290
>At5g61740.1 68418.m07747 ABC transporter family protein ABC family
transporter, Entamoeba histolytica, TREMBL:EH058
Length = 848
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Frame = +2
Query: 158 EDVNRVSEMATEVSSAPTTLPQLQSVQKAMAIPTVEAAVGQVGAIYSKVKGAHSLLEWAL 337
E +V M +S + L QK IP E + V + KVK ++ W L
Sbjct: 767 EHEEKVERMVKHISPNSKRVYHLAGTQK-FEIPKQEVMIADVFFMVEKVKSKFTVFAWGL 825
Query: 338 --STAEAGVVLAATTAAPYVS 394
+T E ATTA + S
Sbjct: 826 ADTTLEDVFFKVATTAQAFNS 846
>At5g46800.1 68418.m05766 mitochondrial carnitine/acyl carrier,
putative / a bout de souffle (BOU) / CAC-like protein
identical to SP|Q93XM7 Mitochondrial
carnitine/acylcarnitine carrier-like protein (A BOUT DE
SOUFFLE) (Carnitine/acylcarnitine translocase-like
protein) (CAC-like protein) {Arabidopsis thaliana};
contains Pfam profile: PF00153 mitochondrial carrier
protein
Length = 300
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 505 SCAIENIPSREQGVRSPRGRRATGQVFEGALVGQSERAALHRLRAEGDARG 657
+C E I R Q + G T V G A H LR+EG ARG
Sbjct: 122 ACPTELIKCRLQAQGALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARG 172
>At1g06620.1 68414.m00699 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967); contains
Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
family
Length = 365
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 617 LLSTAYGQKAMHGVDYGATYAMQLLDHYLPP 709
LLS A G H D T ++ LL HY PP
Sbjct: 195 LLSEALGLNTNHLKDMDCTNSLLLLGHYYPP 225
>At2g43700.1 68415.m05432 lectin protein kinase family protein
contains pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 658
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 538 QGVRSPRGRRATGQVFEGALVGQSERAALHRLRAEGDARGGLRSYL 675
+G + G+ GQVF+G L G A+ R+ D++ G++ +L
Sbjct: 334 KGFKQLLGKGGFGQVFKGTLPGSDAEIAVKRI--SHDSKQGMQEFL 377
>At2g30830.1 68415.m03759 2-oxoglutarate-dependent dioxygenase,
putative similar to 2A6 (GI:599622) and tomato ethylene
synthesis regulatory protein E8 (SP|P10967)
Length = 358
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 617 LLSTAYGQKAMHGVDYGATYAMQLLDHYLPP 709
LLS A G K H + ++ LL HY PP
Sbjct: 188 LLSEALGLKPNHLKELNCAKSLSLLSHYYPP 218
>At5g42280.1 68418.m05146 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 694
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 310 TFDF*INCSDLPNSSFNGRDSHCLLHRLELWQCCGS*AYFCRHF 179
TF +NC+ LP+ +G H L L +C G + +C +
Sbjct: 499 TFLVDVNCASLPDPFIHGCHPHDLFFNLTEGKCMGCSSDYCSSY 542
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1)
/ cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 119
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +2
Query: 479 KVIVETTKQAVLSKISPHVNKVYGARAVAEQRVKSLKELSWAKANALLSTAYGQKAMHGV 658
K+I+ TT++A + ++ + +A E+ + + S AK L ++G+ M
Sbjct: 31 KIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLG-SFGRGQMQKP 89
Query: 659 DYGATYAMQLLD 694
ATYA+++ D
Sbjct: 90 FEEATYALKVGD 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,310
Number of Sequences: 28952
Number of extensions: 269120
Number of successful extensions: 735
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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