Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n01
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...   281   8e-77
SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein |Sch...    54   2e-08
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    33   0.060
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   4.0  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   5.2  
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    26   5.2  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    26   6.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   6.9  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   9.2  

>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score =  281 bits (689), Expect = 8e-77
 Identities = 140/246 (56%), Positives = 175/246 (71%), Gaps = 1/246 (0%)
 Frame = +3

Query: 42  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 218
           MDEEYDVIVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+  L +L+A F    
Sbjct: 1   MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59

Query: 219 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 398
              E+ GR RDW VDL+PKFLMANG L  +LI+T VTRY+EFK I GSYVY+ G+I+KVP
Sbjct: 60  QRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVP 119

Query: 399 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 578
            ++ EAL S LM +FEKRR + FL +V +++E+D  T+KD +    +M+S++ KFGL   
Sbjct: 120 GNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSG 179

Query: 579 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXXXXXFAR 758
           TQDF GHA+ALYLDD YL++PA +T  RI LY+ S+AK                   FAR
Sbjct: 180 TQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPLYGLGELPQGFAR 239

Query: 759 LSAIYG 776
           LSAIYG
Sbjct: 240 LSAIYG 245


>SPBC15C4.03 |||Rab geranylgeranyltransferase escort protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 30/184 (16%)
 Frame = +3

Query: 54  YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT--PLEELFAKFNAPAPD 227
           YDVI++GT L+  ILS  LS + ++VLHID N +YG    S+T   LE++  K       
Sbjct: 7   YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSS 66

Query: 228 ETYGRG------------RDWNVDLIPK-----------FLMANGLLVKLLIHTGVTRYL 338
           +                 +  N DLIPK            + A+  LVKLL  T + +YL
Sbjct: 67  QILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYL 126

Query: 339 EFKSIEG-SYVYKGGKISKVPVDQKEALASDLMGMFEKR---RFRNFLIYVQDFQEED-A 503
             K       +    +  KVP  + +   +  + +  KR   RF  F+  + D Q ++  
Sbjct: 127 LLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLV 186

Query: 504 KTWK 515
           K W+
Sbjct: 187 KEWE 190


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 32.7 bits (71), Expect = 0.060
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 48  EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 149
           ++ D+I++G G+  C L   L   G+KVL ++R+
Sbjct: 4   QDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 120 GKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 290
           GKK +  +RN Y   ++    PL     K + P+  ++  + +D N D   + L+ N
Sbjct: 2   GKKSVSFNRNNYKKRKNERTEPLPRRIFKNDKPSKFKSKRKEKDKNSDAYDEMLLNN 58


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 186 LEELFAKFNAPAPDETYGRGRDWNVDLIPKF 278
           L  L  K  A AP +TY   + W    +PKF
Sbjct: 32  LRSLIEKEEAAAPPKTYEDFKFWKTQPVPKF 62


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 462 NFLIYVQDFQEEDAKTWKDFDPSTANM 542
           N LIY+ + Q     TWKD+DP++  M
Sbjct: 22  NELIYIDEEQ-----TWKDYDPNSLKM 43


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 109 CRFLGRRFCTSIAISTTVVNLRQL 180
           CR L R+F  ++ +ST++V ++QL
Sbjct: 116 CRILTRKFRLAVYLSTSLVYIKQL 139


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 216 PAPDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV 326
           P P +  G  + + V     F++ANG L+K LIH  +
Sbjct: 14  PRPAQALGINQPF-VSAYLSFVLANGFLLKWLIHYSI 49


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = -2

Query: 443 KHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVPGDARVNKQFD*QSISHQKLRNQ 264
           K +HK+ ++S FL D +  DF+ F+ I   D +  Q   + R   +F   S   + +R++
Sbjct: 378 KFSHKMLKRSQFLNDHFDADFN-FIQI-DHDPITNQ---ETRKPVKF---SKPTKDIRSR 429

Query: 263 V-NVPVSTSTVCFIRCRCVELSEQLL 189
           +  VP ST     IR   ++L E+ L
Sbjct: 430 LKEVPTSTDEEFIIRQELMDLLEKCL 455


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 63  IVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 170
           IV+G GL     +  +   G  VL +D+N  +GG S
Sbjct: 42  IVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGGNS 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,361,854
Number of Sequences: 5004
Number of extensions: 73236
Number of successful extensions: 228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)