Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n01
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30272| Best HMM Match : GDI (HMM E-Value=0)                        284   6e-77
SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)              105   4e-23
SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)                    77   2e-14
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   66   2e-11
SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)                     33   0.34 
SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.45 
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               30   1.8  
SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   30   2.4  
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   28   7.3  
SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08)                   28   9.7  

>SB_30272| Best HMM Match : GDI (HMM E-Value=0)
          Length = 1199

 Score =  284 bits (696), Expect = 6e-77
 Identities = 136/252 (53%), Positives = 176/252 (69%), Gaps = 7/252 (2%)
 Frame = +3

Query: 42  MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFN-AP 218
           MD EYD +VLGTGLKEC+LSG+LS++ KKVLH+DRNKYYGG+ AS+ PL +L+  F    
Sbjct: 1   MDAEYDYVVLGTGLKECVLSGLLSLNKKKVLHMDRNKYYGGDCASLHPLNQLYETFGRTD 60

Query: 219 APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGV-TRYLEFKSIEGSYVYKGGKISKV 395
            P ++ G+ RD+NVDLIPKFLMA+G LVK+L+HTGV T+Y+ FK IEGS+VY+GG + KV
Sbjct: 61  FPGDSLGKPRDYNVDLIPKFLMADGTLVKILVHTGVATKYMNFKQIEGSFVYRGGSVHKV 120

Query: 396 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKD-----FDPSTANMQSLYDK 560
           P ++KEAL S LMG+FEKRRFRNFLI+    + E+A TWKD     FDP    M  ++  
Sbjct: 121 PANEKEALNSSLMGIFEKRRFRNFLIFALGVEPENASTWKDYAGGNFDPKKTTMNDVFKA 180

Query: 561 FGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXXXXXXXXX 740
           + L ++T DFTGHA+ALY DD Y+ +P  + I RIKLY  SL+K                
Sbjct: 181 YDLSQDTADFTGHAIALYRDDEYMSKPCEEAIMRIKLYYQSLSKYGGSPYIYPVYGLGEL 240

Query: 741 XXXFARLSAIYG 776
              FARL A++G
Sbjct: 241 PQGFARLCAVWG 252


>SB_2490| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score =  105 bits (252), Expect = 4e-23
 Identities = 48/74 (64%), Positives = 58/74 (78%), Gaps = 4/74 (5%)
 Frame = +3

Query: 87  ECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDE----TYGRGRDW 254
           ECILSG LSV+GKKVLH+D  K+YGGE+AS+TPL +LF KFN   P E     +GR RDW
Sbjct: 19  ECILSGALSVAGKKVLHMDSQKFYGGETASLTPLSQLFDKFNRSMPKEEIEKRFGRERDW 78

Query: 255 NVDLIPKFLMANGL 296
           NVDL+PKF+MA G+
Sbjct: 79  NVDLVPKFIMAGGI 92


>SB_9517| Best HMM Match : GDI (HMM E-Value=1.8e-14)
          Length = 175

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 37/79 (46%), Positives = 48/79 (60%)
 Frame = +3

Query: 540 MQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAKXXXXXXXXX 719
           M  +Y KFGLD NT DF GHA+AL ++D+Y  QP  QT+ +IKLY++SL++         
Sbjct: 1   MTEVYQKFGLDANTADFVGHAMALEINDSYKDQPFGQTVEKIKLYNESLSRYGKSPYLYP 60

Query: 720 XXXXXXXXXXFARLSAIYG 776
                     FARLSAIYG
Sbjct: 61  LYGLGEIPQGFARLSAIYG 79


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
 Frame = +3

Query: 246 RDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALAS 425
           R +N+DL PK L++ G LV+ LI   ++ Y EFK++     +  G +  VP  + +  +S
Sbjct: 323 RQFNIDLAPKLLLSRGALVESLISANISHYAEFKAVNQILTFLEGSMEAVPCSRSDVFSS 382

Query: 426 DLMGMFEKRRFRNFLIYVQDFQE--EDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGH 599
            L+ + EKR    FL +  D  E  E+ K ++D  P    ++S      +  N Q F  H
Sbjct: 383 KLIPVIEKRLLMKFLTFCLDHNEHLEEYKPFED-KPFVEFLKSR----RMTPNLQHFVIH 437

Query: 600 ALALYLDD 623
           A+A+   D
Sbjct: 438 AIAMVKPD 445



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 26/44 (59%), Positives = 31/44 (70%)
 Frame = +3

Query: 51  EYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 182
           EYD IVLGTGL E +++  LS  G KVLH+DRN YY  + AS T
Sbjct: 7   EYDAIVLGTGLPEAVVAAALSRIGLKVLHLDRNDYYSSQWASFT 50


>SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)
          Length = 576

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 610 RARACPVKSWVFLSNPNLSYSDCMFAVEGSKS 515
           R R C    W F+S P++ Y +  F V GSKS
Sbjct: 111 RLRVCVHNGWTFVSEPHMVYLEPEFEVGGSKS 142


>SB_47418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 635

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = +3

Query: 48  EEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 164
           +E D +V+G+G+     + +L+ +GKK+L ++++   GG
Sbjct: 84  DEVDAVVIGSGIGGMTCASLLAKTGKKILVLEQHDQAGG 122


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 301 SNCLFTRASPGTWSLSPSKEVMFTKVEKSPKYL 399
           SNC+ T+ S  T  L P+K+V+  +  + PK L
Sbjct: 693 SNCINTKDSDQTTKLRPNKDVIMDEPHRDPKQL 725


>SB_1949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = -1

Query: 270 ESSQRSSLDLDRMFHQV-PVR*T*RTAPLTG*LTQIHHRSTYCDRCAKPSS 121
           +++Q +  D+D    +  P++ T   +P TG  + +H ++T  DR A+P+S
Sbjct: 260 DNTQANVTDIDEAIAKARPIKITEDASPTTG-TSGVHQKATVIDRAARPAS 309


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 330 RYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQ 491
           R+L+F+ +  S + KG    K+P  + E +A ++  +  +R F   L Y+ D +
Sbjct: 368 RWLQFEKVVASLIEKGFNSIKLP--EAERIAEEVCQIDNEREFLTLLNYLHDLK 419


>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 882

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 347 VHRRKLCLQRWKNLQSTCRSERSSCV*SYGHV*EEAFPQLLNLRSRFPGRRCQDMEG 517
           +H  + CL   K+  ++  S+    + SYG    +  P LL + +RF    C  +EG
Sbjct: 345 MHHIRNCLPELKSRVNSMTSQYHHLLQSYGEPVMDKGPYLLQMITRFAATYCSIIEG 401


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 464 VAETPLLKHAHKIRRKSFFLIDRYFGDFSTFVNITSFDGLKLQVP 330
           V++T L ++   IR      I+ YFG+ +  VNI   D  K QVP
Sbjct: 735 VSDTSLPEYTSVIRN-----IEEYFGNLTASVNILEVDLTKCQVP 774


>SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08)
          Length = 155

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +3

Query: 384 ISKVPVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSL 551
           +S+V   +   LA +L G+F +       + VQ+  EE  KTW   D   A   +L
Sbjct: 98  LSQVLEYEGRFLAQELDGLFVQVSISEGYVEVQELLEEGIKTWLQRDVERARGSAL 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,919,634
Number of Sequences: 59808
Number of extensions: 547817
Number of successful extensions: 1203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)