Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n01
(777 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1) i... 262 2e-70
At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2) i... 261 4e-70
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ... 175 3e-44
At3g06540.1 68416.m00758 GDP dissociation inhibitor family prote... 52 6e-07
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long... 33 0.21
At4g37190.1 68417.m05265 expressed protein 31 1.1
At3g23410.1 68416.m02951 alcohol oxidase-related similar to long... 30 2.0
At4g02990.1 68417.m00406 mitochondrial transcription termination... 29 4.5
At3g01840.1 68416.m00125 protein kinase family protein contains ... 29 4.5
At1g06820.1 68414.m00727 carotenoid isomerase, putative similar ... 29 4.5
At5g24155.1 68418.m02841 squalene monooxygenase, putative / squa... 28 6.0
At1g79020.1 68414.m09214 transcription factor-related similar to... 28 6.0
At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein ... 28 7.9
At4g36070.1 68417.m05135 calcium-dependent protein kinase family... 28 7.9
>At2g44100.1 68415.m05484 Rab GDP dissociation inhibitor (GDI1)
identical to GDP dissociation inhibitor [Arabidopsis
thaliana] GI:1655424
Length = 445
Score = 262 bits (641), Expect = 2e-70
Identities = 132/247 (53%), Positives = 167/247 (67%), Gaps = 2/247 (0%)
Frame = +3
Query: 42 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPA 221
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59
Query: 222 PDETY-GRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVP 398
+ G RD+NVD++PKF+MANG LV++LIHT VT+YL FK+++GSYV+ GK+ KVP
Sbjct: 60 KAPAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVP 119
Query: 399 VDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRN 578
EAL S LMG+FEKRR F YVQ++ E+D KT D + L KFGL +
Sbjct: 120 ATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKED 179
Query: 579 TQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAK-XXXXXXXXXXXXXXXXXXXFA 755
T DF GHA+AL+ +DN+L QPA T+ R+KLY++SLA+ FA
Sbjct: 180 TIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFA 239
Query: 756 RLSAIYG 776
RLSA+YG
Sbjct: 240 RLSAVYG 246
>At3g59920.1 68416.m06687 Rab GDP dissociation inhibitor (GDI2)
identical to Rab GDP dissociation inhibitor AtGDI2
[Arabidopsis thaliana] GI:2446981
Length = 444
Score = 261 bits (639), Expect = 4e-70
Identities = 133/248 (53%), Positives = 168/248 (67%), Gaps = 3/248 (1%)
Frame = +3
Query: 42 MDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAP- 218
MDEEY+VIVLGTGLKECILSG+LSV G KVLH+DRN YYGGES S+ L +L+ KF
Sbjct: 1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLN-LNQLWKKFRGEE 59
Query: 219 -APDETYGRGRDWNVDLIPKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKV 395
AP E G RD+NVD++PKF+M NG LV+ LIHT VT+YL FK+++GSYV+ GK+ KV
Sbjct: 60 KAP-EHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKV 118
Query: 396 PVDQKEALASDLMGMFEKRRFRNFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDR 575
P EAL S LMG+FEKRR F +VQ++ E+D KT D + + L K+GLD
Sbjct: 119 PATPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDG 178
Query: 576 NTQDFTGHALALYLDDNYLQQPAIQTIRRIKLYSDSLAK-XXXXXXXXXXXXXXXXXXXF 752
NT DF GHA+AL+ +D +L QPA T+ R+KLY++SLA+ F
Sbjct: 179 NTIDFIGHAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAF 238
Query: 753 ARLSAIYG 776
ARLSA+YG
Sbjct: 239 ARLSAVYG 246
>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
strong similarity to GDP dissociation inhibitor protein
OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
PF00996: GDP dissociation inhibitor
Length = 365
Score = 175 bits (426), Expect = 3e-44
Identities = 88/166 (53%), Positives = 112/166 (67%), Gaps = 1/166 (0%)
Frame = +3
Query: 282 MANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVDQKEALASDLMGMFEKRRFR 461
MANGLLV+ LIHT VT+YL FK+++GS+VYK GKI KVP EAL S LMG+FEKRR R
Sbjct: 1 MANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPATDVEALKSPLMGLFEKRRAR 60
Query: 462 NFLIYVQDFQEEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHALALYLDDNYLQQP 641
F IYVQD+ E+D K+ + D S + + K+GL+ +T DF GHALAL+ DD+YL QP
Sbjct: 61 KFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDTIDFIGHALALHNDDDYLDQP 120
Query: 642 AIQTIRRIKLYSDSLAK-XXXXXXXXXXXXXXXXXXXFARLSAIYG 776
AI ++RIKLY++SLA+ FARLSA+YG
Sbjct: 121 AIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYG 166
>At3g06540.1 68416.m00758 GDP dissociation inhibitor family protein
/ Rab GTPase activator family protein similar to
SP|P26374 Rab proteins geranylgeranyltransferase
component A 2 (Rab escort protein 2) {Homo sapiens};
contains Pfam profile PF00996: GDP dissociation
inhibitor
Length = 563
Score = 51.6 bits (118), Expect = 6e-07
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Frame = +3
Query: 15 IELIFYTIIMDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT-PLE 191
I++ Y + YD+IV+GTG+ E +L+ S SG VLH+D N +YG AS++ P
Sbjct: 2 IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61
Query: 192 ELFAKFNAPAP 224
F N+ +P
Sbjct: 62 TSFLHSNSVSP 72
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +3
Query: 246 RDWNVDLI-PKFLMANGLLVKLLIHTGVTRYLEFKSIEGSYV-YKGGKISKVPVDQKEAL 419
R +NVDL P+ + + L++ +G Y+EFKSI+ S+V G++ VP D + A+
Sbjct: 118 RRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVP-DSRAAI 176
Query: 420 ASD-LMGMFEKRRFRNFLIYVQ 482
D + + EK + F VQ
Sbjct: 177 FKDKSLTLLEKNQLMKFFKLVQ 198
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 726
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 39 IMDEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 179
+M + D +V+G+G + +G+L+ +G KVL I+ YY S+
Sbjct: 219 VMKIQCDAVVVGSGSGGGVAAGVLAKAGYKVLVIESGNYYARSKLSL 265
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 492 EEDAKTWKDFDPSTANMQSLYDKFGLDRNTQDFTGHAL 605
+E+ + W DF S + QSLY+ GL ++Q F + +
Sbjct: 146 DEEVECWTDFSKSHYHPQSLYELNGLWMDSQAFNNYGI 183
>At3g23410.1 68416.m02951 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 746
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 57 DVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETY 236
DV+V+G+G + + +L+ SG KV+ +++ Y+ TP E F P D+ Y
Sbjct: 234 DVVVVGSGSGGGVAASVLAKSGLKVVVLEKGSYF-------TPSEH--RPFEGPGLDKLY 284
Query: 237 GRG 245
G
Sbjct: 285 ENG 287
>At4g02990.1 68417.m00406 mitochondrial transcription termination
factor family protein / mTERF family protein weak
similarity to mtDBP protein [Paracentrotus lividus]
GI:4584695; contains Pfam profile PF02536: mTERF
Length = 541
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 590 EILGVSI*PKLIVQRLHVCS*GIKILP-CLGIFFLEILNVD*EVAETPLLKHAHKIRRKS 414
EI+G+ + PKL QR +CS I + P LG +E + ++E+P+LKH + +
Sbjct: 349 EIIGIDLKPKLDTQRKLLCS-AIHLNPEDLG-SLIERMPQFVSLSESPMLKHIDFLTKCG 406
Query: 413 F 411
F
Sbjct: 407 F 407
>At3g01840.1 68416.m00125 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 654
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = -1
Query: 570 LTQTYRTATACLQLRDQNPSMSWHLLPGNLERRL 469
++Q+ + T CL +R++NP +S L N++ RL
Sbjct: 124 VSQSLQGLTTCLSIREKNPHISEDKLGDNIKLRL 157
>At1g06820.1 68414.m00727 carotenoid isomerase, putative similar to
carotenoid isomerase from Lycopersicon esculentum
[gi:19550437]; contains Pfam profile: PF02032 Phytoene
dehydrogenase related enzyme
Length = 595
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 54 YDVIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 170
YD IV+G+G+ + + L+V +VL +++ GG S
Sbjct: 78 YDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSS 116
>At5g24155.1 68418.m02841 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2)
Length = 121
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 45 DEEYDVIVLGTGLKECILSGMLSVSGKKVLHIDRN 149
D DVI++G G+ L+ L+ G++VL I+R+
Sbjct: 45 DSAADVIIVGAGVGGSALAYSLAKDGRRVLAIERD 79
>At1g79020.1 68414.m09214 transcription factor-related similar to
enhancer of polycomb (GI:3757890) [Drosophila
melanogaster]; similar to enhancer of polycomb
(GI:11907923) [Homo sapiens]
Length = 453
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 482 LNVD*EVAETPLLKHAHKIRRKSFFLIDRYFGDFS-TFVNITSF 354
+ VD EVA P K A +I F ++D Y D+S TF S+
Sbjct: 47 VEVDNEVAPVPSKKPASEIPTPQFVIVDTYERDYSPTFGQPASY 90
>At5g04340.1 68418.m00426 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 238
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +3
Query: 111 SVSGKKVLHIDRNKYYGGESASITPLEELFAKFNAPAPDETYGRGRDWNVDLIPKFLMAN 290
++ G K H + K GG S+S++ E++ + + + RG D N+ IP+F M N
Sbjct: 162 ALGGHKRCHYE-GKNGGGVSSSVSNSEDVGSTSHVSSGH----RGFDLNIPPIPEFSMVN 216
Query: 291 G 293
G
Sbjct: 217 G 217
>At4g36070.1 68417.m05135 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 536
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 285 ANGLLVKLLIHTGVTRYLEFKSIEGSYVYKGGKISKVPVD 404
A + KLL+ R +++ S+V +GG+ S+VP+D
Sbjct: 301 AKDFVKKLLVKEPRARLTAAQALSHSWVKEGGEASEVPID 340
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,459,714
Number of Sequences: 28952
Number of extensions: 385829
Number of successful extensions: 1026
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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