Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m24
(678 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 33 0.029
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 30 0.35
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 30 0.35
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 29 0.62
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.82
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.4
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 28 1.4
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 27 3.3
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 5.8
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 25 7.6
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 25 7.6
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.6
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/48 (31%), Positives = 33/48 (68%)
Frame = +3
Query: 297 AKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAENGE 440
+++ E DS + E E++ +E+++ E+S+E E+ + ESE+++E+ E
Sbjct: 78 SEDSESDSESSEEEEETESEEDS-EVSDESESESESESESEEESESEE 124
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 29.9 bits (64), Expect = 0.35
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +3
Query: 225 VEQLADVDALKPQINGDAH---IHEQTAKEKELDSG-TPEN--EKDAT-TEKEAIEISNE 383
V+ +VD+L+PQ N D H A E +D T N E D T + E I ++N+
Sbjct: 320 VDYRDEVDSLRPQFNVDEQSSISHSSNASENIVDGAVTQANGIESDFTRVDHEPIIVNND 379
Query: 384 KEAGPVTNGESEQK 425
E G N ESE +
Sbjct: 380 DENG---NNESENE 390
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 29.9 bits (64), Expect = 0.35
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 647 FILRLFSSCFNHLFGNLFRFTIC 579
FILRLF+ FN LF +LF + C
Sbjct: 147 FILRLFNDGFNSLFSSLFILSSC 169
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 29.1 bits (62), Expect = 0.62
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 288 EQTAKEKELDSGTPENEKDATTEKEAIEISNEKEA 392
+QT KEK++DS + ENE ++ + E S + ++
Sbjct: 108 QQTEKEKDVDSASAENESINSSSSSSKECSTQTQS 142
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.7 bits (61), Expect = 0.82
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +3
Query: 225 VEQLADVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVT 404
V+ DA + DA E+ KE D G +DA+ + E+ E + G
Sbjct: 180 VDWAVSKDAFEATTLKDASSEEEN-KEFVSDEGHSIVTEDASADSESEEEVDGHSEGKEL 238
Query: 405 NGESEQKAENGESVTTTPD 461
GESE++ N + V + D
Sbjct: 239 AGESEEEGSNVDDVEDSGD 257
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +3
Query: 228 EQLADVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTN 407
EQ DV+ L ++ + T+KE D + EKE +E ++ E N
Sbjct: 6 EQTDDVETLMASLDQLGMEADPTSKEFNNDDSKIGAPSEVQDEKELLEFLDQLENDEEKN 65
Query: 408 GES--EQKAENGESVTTTPDD 464
++ E+ E ESV T ++
Sbjct: 66 EKNPIEEANEENESVAATSNE 86
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Frame = +3
Query: 228 EQLADVDALKPQINGDAHIHEQ----TAKEKELDSGTPENEKDATTEKEAIEISNEKEAG 395
E++ D + P I D E AK E DS E D+T + + EK +
Sbjct: 162 EEVFDTEITNPVIPADEDDDEYQDLPAAKRHEGDS-IKSTEHDSTLDSGVVIDGREKSSS 220
Query: 396 PVTNGESEQKAENGESVTTTPD 461
+ ESEQ AE + + D
Sbjct: 221 ELHEEESEQAAEGDTAKNSGTD 242
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 264 INGDAHIHEQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTN 407
+N DA++ EQ+ K E PE E++ K A NE V++
Sbjct: 297 VNSDANVVEQSEKTTEDADEEPETEENLDEFKPADGADNEDSKSLVSH 344
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +3
Query: 294 TAKEKELDSGTPENEKDATTEKEAIEISNEK-EAGPVTNGESEQKAENGESVTTT 455
+ KEKE D + EN + A N+K AG + E +G+S +T
Sbjct: 205 SGKEKENDKKSSENFDELLANTSAKAFENQKGSAGETKSEPKEADKGSGDSTKST 259
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +3
Query: 288 EQTAKEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKA 428
E++ EKEL + + +D + EA++ +NE+ + + E A
Sbjct: 251 EESEPEKELKATFNQQNQDLYNQTEALKSTNEELINQIKSAEELDSA 297
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 300 KEKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAENGES 443
+++EL ENE + ++E + + ++NE+ N E+ GES
Sbjct: 4 RKEELSQTLYENESEQSSETKELMLNNEESLSDWRNYFDEKLTIPGES 51
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +3
Query: 240 DVDALKPQINGDAHIHEQTAKEKELDSGTPENEKDATTEKE---AIEISNEKEAGPVTNG 410
DV++++ +G IH E+ +D+ E D++ + A SNE +
Sbjct: 319 DVESVRDPDDGTLPIHSTQTVEEPIDTKAGEKLTDSSKQPSPPVAEHFSNETFSASPKGA 378
Query: 411 ESEQKAENGES 443
E++ K+E +
Sbjct: 379 ETDVKSEGSNN 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,099
Number of Sequences: 5004
Number of extensions: 35233
Number of successful extensions: 139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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