Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m24
         (678 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domai...    24   5.1  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   5.1  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              23   6.7  

>DQ370037-1|ABD18598.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +3

Query: 411 ESEQKAENGESVTTTPD 461
           +++Q+AE+GE+V  TP+
Sbjct: 24  KTDQEAEHGETVPATPE 40


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 303  EKELDSGTPENEKDATTEKEAIEISNEKEAGPVTNGESEQKAENG 437
            ++ +D+  PE E +   +KEA    N ++A  V + E   K ENG
Sbjct: 1216 QEAIDASAPEVEDEVELDKEA---PNVRDAAEV-DEEDGLKMENG 1256


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/57 (19%), Positives = 29/57 (50%)
 Frame = +2

Query: 422 ESRKWRISYYYSR*RQETKERKSEKEVVAQVYQLQQER*AQTRKEAKGRGD*DKW*T 592
           + R+W+      + +Q  ++++   +   Q +Q QQ++  Q R++ + +   + W T
Sbjct: 256 QQREWQQQQQQQQHQQREQQQQQRVQQQNQQHQRQQQQQQQQRQQQQQQEQQELWTT 312


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,661
Number of Sequences: 2352
Number of extensions: 9033
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)