Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m23
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 30 0.25
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 4.1
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 4.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 4.1
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 5.5
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom... 25 7.2
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 9.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 9.5
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 25 9.5
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 25 9.5
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 30.3 bits (65), Expect = 0.25
Identities = 25/90 (27%), Positives = 38/90 (42%)
Frame = +1
Query: 58 DDIYGYLEEFSKRKPKSIPQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNVITDFYDT 237
+D Y +E+F K PK+ P+E+ EY V ++ +W L L L + D
Sbjct: 127 NDHYISIEQFCKNMPKTTPEEVLEYEFNVCQS----LKWDLYVWLPFRPLQGFLLDCQTV 182
Query: 238 TPNTDIPPYPNVDPFNYDTMKNSLIERLES 327
P + + +D K LIE L S
Sbjct: 183 LPKVAVEKFYEC----HDLSKKFLIETLHS 208
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 484 ENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDA 627
E+ +++ V+ S+ NSE ++ + + +E+ + NSE SD+
Sbjct: 116 EDASDSDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEESDS 163
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.1
Identities = 26/118 (22%), Positives = 48/118 (40%)
Frame = +1
Query: 283 NYDTMKNSLIERLESFTSAPFTVQRICELLTYPRKQYNRVDKFMRAIEKNILVVSTREPG 462
+Y T N+L+ER VQ+I N + + + N++
Sbjct: 541 SYGTEINNLLERRNELLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLV------KQ 594
Query: 463 IVRQPEPENGDNAEHLVNGSDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHIS 636
I + PEN N EH + S N+ +++ + VS + Q + P P S + +++
Sbjct: 595 IQHRVPPENQSNLEHTITTSSKNTTSSIN-PLTAVS--SNSGQSSGRPGPLSPNLNVT 649
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 103 KSIPQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNVITDFYDTTPNTDIPPYPNV 273
K + ++ NE + Y + D + ++ L K L N+ T+ DT+ + PNV
Sbjct: 1115 KHLKEQFNEGVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMHKLFELLPNV 1171
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 520 SDNNSEYNVDVEMEDVSWKEATEQRNSEPQPCSSDAHISVDD 645
S N+SE D+ V+ +E +E + PQ S +++DD
Sbjct: 86 SKNDSEITPDINRSKVNPQEYSEFSVASPQTISPSLPLNLDD 127
>SPBC800.12c |||ubiquitin family protein,
unknown|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +1
Query: 46 MENADDIYGYLEEFSK---RKPKSIPQELNEYLAYVARTGDPVYQWPLVKSLFKEKLLNV 216
M + +LEE SK P SIP E + A P+ ++ +LF+EK ++V
Sbjct: 1 MSEVQIVKSFLEELSKTPRNHPDSIPIEKIDETAISITIPAPLVEFQGNLALFEEKKVHV 60
Query: 217 I 219
+
Sbjct: 61 V 61
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 559 EDVSWKEATEQRNSEPQPCSSDAH 630
EDVSW++ + +P +DAH
Sbjct: 107 EDVSWQDLKDVMRKAGEPTFTDAH 130
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 475 PEPENGDNAEHLVNGSDNNSEYNVDVEMED 564
PE E + + + N NS+YN ++MED
Sbjct: 191 PEVEKIETSTSVENAYITNSQYNDTLDMED 220
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 365 SQILCTVNGADVKDSKRSIKLFFIVS 288
S++L N +KD R++KLFF+ S
Sbjct: 442 SEVLKYRNQVQLKDKARNMKLFFLKS 467
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 439 VVSTREPGIVRQPEPENGDNAEHLVNGSDNNSEY 540
+++ + ++R+P+ NG A++ N SD EY
Sbjct: 201 LITFNKISVIRRPDTLNGIGAQNPNNKSDYEKEY 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,187
Number of Sequences: 5004
Number of extensions: 61354
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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