Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m21
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335...    44   7e-05
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212...    33   0.13 
12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805           29   3.7  

>02_05_0343 +
           28132348-28132878,28133256-28133366,28133477-28133590,
           28134077-28134367,28134447-28134557,28134658-28134711,
           28135587-28135666,28135749-28135864,28136491-28136605,
           28136740-28136788,28136984-28137106
          Length = 564

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
 Frame = +2

Query: 302 PSTESEPDFSEGLYGNMKMIQ-SSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKG 478
           P  +++  F+   YG++ + +  S     RV+T++  L     G++V +R   Q  R   
Sbjct: 56  PQADADDPFAAN-YGDVPVEEIQSKTISGRVWTEIGGLDEAAAGRSVLIRGAAQAIRPVS 114

Query: 479 KQ-CFAVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNI 589
           K+  F VLR++ STVQ ++  +    +S QMV+F  ++
Sbjct: 115 KKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFATSL 152


>02_01_0316 +
           2125283-2125687,2125768-2125881,2125986-2126099,
           2126271-2126561,2126658-2126768,2127317-2127370,
           2127555-2127634,2127912-2128027,2128141-2128382
          Length = 508

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 392 YTDVENLSIKMDGQTVWVRARLQTSRAKGKQ-CFAVLRQTSSTVQLLV 532
           + DV  L   + G+ V VR      RA G++  F VLRQ SSTVQ +V
Sbjct: 42  WADVAALGPDVAGRAVRVRGAAHAVRAVGRRVAFLVLRQGSSTVQCVV 89


>12_01_0487 - 3860618-3860852,3860964-3861121,3861266-3861805
          Length = 310

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 428 RPF*YSNFQHQCKPCHDVHLTIGSFSYSHKVLLR 327
           RP   + F H C+   D HL I S  +SHK+  R
Sbjct: 110 RPLTQAAFDHLCQATFD-HLNIVSIDFSHKLSFR 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,567,104
Number of Sequences: 37544
Number of extensions: 181920
Number of successful extensions: 377
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)