Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m21
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23545| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)                 27   8.7  

>SB_23545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 35

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 479 KQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKF 577
           KQCF  LR    TVQ L + ++   +SK MVKF
Sbjct: 2   KQCFMTLRDRQYTVQALCAASD--VVSKHMVKF 32


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 302  PSTESEPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVR-ARLQTSRAKG 478
            PS+   P FS  L  +  +  S+    D      E  S K  G   WVR +RL   R K 
Sbjct: 1726 PSSLLSPTFSPSLSASTLLSHSAAVEDDDSKESTERNSDKSPGLHCWVRKSRLPKGRRKS 1785

Query: 479  KQ 484
            K+
Sbjct: 1786 KR 1787


>SB_45684| Best HMM Match : T-box (HMM E-Value=1.5e-32)
          Length = 337

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
 Frame = +2

Query: 398 DVENLSIKMDGQTVWVR-ARLQTS---RAKGKQCFAVLRQTSSTVQ 523
           D++N+S++++G+ +W R + L T       G++ F  LR + S VQ
Sbjct: 178 DLQNISVELEGRELWERFSELGTEMIITKAGRRMFPTLRISVSGVQ 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,729,032
Number of Sequences: 59808
Number of extensions: 221118
Number of successful extensions: 438
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)