Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m21
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    49   2e-06
At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative / as...    48   6e-06
At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative / as...    48   6e-06

>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 28/91 (30%), Positives = 46/91 (50%)
 Frame = +2

Query: 305 STESEPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKGKQ 484
           S E E +     YG++   +       +  TDV NL  ++ G  V +R RL  +R  G +
Sbjct: 44  SLEEEDESCSSNYGDVTTNELQSAVEGKELTDVSNLVEEIVGSEVSIRGRLHKNRLVGTK 103

Query: 485 CFAVLRQTSSTVQLLVSVNEQRKISKQMVKF 577
            F +LR++  TVQ +V   E+ ++   M+KF
Sbjct: 104 LFVILRESGFTVQCVV---EETRVGANMIKF 131


>At4g31180.2 68417.m04427 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +2

Query: 392 YTDVENLSIKMDGQTVWVRARLQTSR-AKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQM 568
           +TDV +L  +M    V +R R+ T+R    K  F VLR++ STVQ +VS +E+ K+   M
Sbjct: 95  WTDVSDLVEEMLESEVLIRGRVHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANM 154

Query: 569 VKF 577
           VK+
Sbjct: 155 VKY 157


>At4g31180.1 68417.m04426 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative similar to
           Aspartyl-tRNA synthetase (Aspartate--tRNA ligase)
           (AspRS) [Homo sapiens] GI:20178330
          Length = 558

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +2

Query: 392 YTDVENLSIKMDGQTVWVRARLQTSR-AKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQM 568
           +TDV +L  +M    V +R R+ T+R    K  F VLR++ STVQ +VS +E+ K+   M
Sbjct: 95  WTDVSDLVEEMLESEVLIRGRVHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANM 154

Query: 569 VKF 577
           VK+
Sbjct: 155 VKY 157


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,683,050
Number of Sequences: 28952
Number of extensions: 156756
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)