Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m19
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    48   1e-06
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   1.9  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   1.9  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    27   1.9  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   3.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.4  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   5.9  
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    25   5.9  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   7.7  

>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
 Frame = +3

Query: 306 KLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDI---RQRMLELYDKKLTKEGY 476
           ++ IS+S SSGPGGQNVNK++TKV +       +   P       +  E+      + G 
Sbjct: 48  QVQISFSRSSGPGGQNVNKLNTKVIVNLPFKQLESCIPMFLINHFKTCEMLRNYRIQNG- 106

Query: 477 LIIKSDCTRSQQLNLADCMRKLRNMI 554
           + I S  TRSQ  N+ D + K+ +++
Sbjct: 107 IKIYSQKTRSQHKNIEDALNKISDLL 132


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 436 ILCLISGCIQSASLNLN 386
           I C++ GC++S  LNLN
Sbjct: 245 ICCILFGCVKSGDLNLN 261


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 436 ILCLISGCIQSASLNLN 386
           I C++ GC++S  LNLN
Sbjct: 212 ICCILFGCVKSGDLNLN 228


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 258 FKPDGNEKFSGFIPIQKLDISYSASSGP 341
           FK   NEK   F+P  K  ++ S SS P
Sbjct: 56  FKTKNNEKTGIFVPFDKCKLASSISSSP 83


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 256 HLNLMVMKNSQDSYRYRNWIYHT 324
           H + +  K++QDS   RNW+ H+
Sbjct: 13  HRSFLQPKDTQDSQDLRNWVSHS 35


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 258  FKPDGNEKFSGFIPIQKLDISYSASSGPG 344
            + P+ N +F+G  P+    IS   SS PG
Sbjct: 1392 YNPESNMEFTGLKPLSPSKISNLPSSQPG 1420


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +3

Query: 204 ISLETLYPNSSLKL--TTPAFKP 266
           +SL+ L PNSSLK+  TTP   P
Sbjct: 371 VSLQVLTPNSSLKVDPTTPLTAP 393


>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 273 NEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDL 383
           N++ S      ++ I    S G GGQ+VN+  + V L
Sbjct: 245 NDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRL 281


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 130 TLYVA*LKMQLVLRYFRGPWDTRAPYHWKPSIQIVL*SSPL 252
           T  VA     LV++     ++ +  YH+K +I+ VL  SP+
Sbjct: 305 TYPVAETAPSLVVKVVNQDYEVKVFYHYKDNIKYVLLDSPI 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,857
Number of Sequences: 5004
Number of extensions: 43544
Number of successful extensions: 121
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)