Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m19
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0369 + 7843364-7843631,7844994-7845053,7845659-7845741,784... 81 5e-16
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 37 0.010
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 36 0.023
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 34 0.069
11_04_0295 - 15988738-15988794,15988890-15988932,15989072-15989217 30 1.5
08_02_0311 - 15635165-15635590,15635777-15638698 29 3.4
01_05_0435 + 22117612-22117756,22118054-22118070,22119154-221192... 28 4.5
02_03_0153 - 15776359-15776516,15776742-15776821,15776912-157769... 28 6.0
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 27 7.9
>03_02_0369 +
7843364-7843631,7844994-7845053,7845659-7845741,
7845834-7845898,7845965-7845998,7846102-7846172,
7850409-7850532,7851151-7851268,7851803-7851889,
7851972-7852055,7852127-7852209,7852556-7852624
Length = 381
Score = 81.4 bits (192), Expect = 5e-16
Identities = 34/87 (39%), Positives = 61/87 (70%)
Frame = +3
Query: 294 IPIQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEG 473
I + + ++++ S G GGQNVNKV+TKVD+RF + +A W+ I++R+L+ ++ K+G
Sbjct: 87 ITLDHVTLNFARSGGAGGQNVNKVNTKVDMRFNVKEAQWLGERIKERILQTEKNRINKDG 146
Query: 474 YLIIKSDCTRSQQLNLADCMRKLRNMI 554
L+I S TR+Q+ N+ D ++K++ +I
Sbjct: 147 ELVISSTKTRTQKGNIEDALQKIQAII 173
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3
Query: 294 IPIQKLDISYSASSGPGGQNVNKVHTKV 377
IP + L+IS++ + G GGQNVNKV T V
Sbjct: 384 IPEEDLEISFTRAGGKGGQNVNKVETAV 411
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = +3
Query: 249 TPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFK 392
T A P+ +E I + +++ + S G GGQNVNKV T VDL K
Sbjct: 233 TVAIMPEADE-VDVVIDPKDIELKTARSGGAGGQNVNKVETAVDLIHK 279
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 34.3 bits (75), Expect = 0.069
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 10/128 (7%)
Frame = +3
Query: 99 PKMTLATLRLNFIRGLIK-NATCTALLQRPLGYKSSISLETLYPNSSLK-LTTPAFKPDG 272
PK+T+ L N RG I N +++LQ + + +S +P SS K L+ G
Sbjct: 457 PKLTVLDLSSNQFRGPIPANLLTSSMLQELYIHDNMLSGGLSFPGSSSKNLSLQVLDISG 516
Query: 273 NEKFSGFIP--------IQKLDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWIHPDIR 428
N F+G +P +Q LDIS + SGP ++ K+ L ++ PD
Sbjct: 517 NH-FNGSLPDEIASLSSLQALDISTNNFSGPLPASITKLAALTALDISINQFTGSLPDAL 575
Query: 429 QRMLELYD 452
L+ ++
Sbjct: 576 PDTLQSFN 583
>11_04_0295 - 15988738-15988794,15988890-15988932,15989072-15989217
Length = 81
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 369 TKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRN 548
TKV+++ K HP+I +R++ + T + ++ + T S +L + M+ L++
Sbjct: 16 TKVEIKIKNVPEHANHPEIMERLVSFFCDAQTYRLHCMLDQNRTLSLKLKILKSMKTLKS 75
Query: 549 M 551
M
Sbjct: 76 M 76
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 219 LYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISY 323
+YP +S+ L F P FSGF +QKLDI++
Sbjct: 923 IYPFTSIFLLVYCFIP-ALSLFSGFFIVQKLDIAF 956
>01_05_0435 +
22117612-22117756,22118054-22118070,22119154-22119224,
22119314-22119377,22119673-22119720,22119805-22119867,
22119945-22120001,22120090-22120248,22120324-22120392,
22120477-22120568,22121129-22121207,22121756-22121918,
22122524-22122648,22122733-22122995,22123085-22123163,
22123254-22123415,22123551-22123655,22123782-22123876,
22123963-22124059,22124154-22124384
Length = 727
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 441 ELYDKKLTKEGYLIIKSDCTR 503
E +DK L KEG+ + DCT+
Sbjct: 311 ESFDKSLEKEGFAVAARDCTK 331
>02_03_0153 -
15776359-15776516,15776742-15776821,15776912-15776983,
15777070-15777110,15777201-15777257,15777344-15777400,
15778441-15778517,15778652-15778760
Length = 216
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 192 YKSSISLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQN 353
YK SL+ + ++TP P GN+ + G P++ + + ++GP G N
Sbjct: 99 YKEGDSLKPAVTGVLVFVSTP--DPVGNKYYLGPAPLEDMARQIATANGPNGNN 150
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 345 GQNVNKVHTKVDLRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLI 482
GQN V D + D +R+R+L + D+ +EG+++
Sbjct: 783 GQNAKFVEVTPDTSLEAPDEAMFRMQLRERLLHVLDRLPPREGHVL 828
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,988,149
Number of Sequences: 37544
Number of extensions: 242542
Number of successful extensions: 603
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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