Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m19
         (567 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)                        31   0.66 
SB_15889| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)                 27   8.1  

>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 356

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +3

Query: 297 PIQKLDI-SYSASS--GPGGQNVNKVHTKVDLRFKLSDADWIHPDIRQRM 437
           PI K+ + +Y+A S  G GGQN+ +V      R KLS  +  +P  ++R+
Sbjct: 12  PILKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERI 61


>SB_15889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 366 HTKVDLRFKLSDADWIHPDIRQRMLELYDK 455
           H K+D R+ LS   WIH D     +  YD+
Sbjct: 91  HAKIDTRYSLSVLLWIHADGNISPIWQYDR 120


>SB_36498| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-14)
          Length = 596

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 162 CTALLQRPLGYKSSISLETLYPNSSLKL 245
           C+ +L RP      I +E  YPN++ +L
Sbjct: 100 CSGILSRPFASSEIIEMENRYPNTTKQL 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,580,652
Number of Sequences: 59808
Number of extensions: 293384
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)