Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m19
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.5  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 550 ILRSFRMQSAKLSC*DRVQSDFMIK 476
           ILR+FR++S       R+Q+D ++K
Sbjct: 505 ILRNFRVRSDVKESEFRLQADIILK 529


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -3

Query: 265 GLNAGVVSFKELFG*RVSNDMELLYPKGL*SNAVQVAFLIKP 140
           G N   VS KEL    V+ D +   PKG      QV  L  P
Sbjct: 309 GFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHP 350


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/31 (22%), Positives = 17/31 (54%)
 Frame = +3

Query: 423  IRQRMLELYDKKLTKEGYLIIKSDCTRSQQL 515
            I+    ++YD  + + G+  +  DCT ++ +
Sbjct: 1051 IQAEASQIYDMLVYEGGHFYVCGDCTMAEDV 1081


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,997
Number of Sequences: 438
Number of extensions: 3157
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)