Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m19
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62850.1 68414.m07096 expressed protein similar to Immature c...    45   3e-05
At5g36170.3 68418.m04360 peptide chain release factor, putative ...    39   0.003
At5g36170.2 68418.m04359 peptide chain release factor, putative ...    39   0.003
At5g36170.1 68418.m04358 peptide chain release factor, putative ...    39   0.003
At3g62910.1 68416.m07067 peptide chain release factor, putative ...    36   0.014
At2g15320.1 68415.m01747 leucine-rich repeat family protein cont...    29   1.6  
At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   6.6  
At4g13810.1 68417.m02140 disease resistance family protein / LRR...    27   6.6  
At2g39120.1 68415.m04806 expressed protein                             27   6.6  

>At1g62850.1 68414.m07096 expressed protein similar to Immature
           colon carcinoma transcript 1 (Digestion substraction 1)
           (DS- 1) (Swiss-Prot:Q14197) [Homo sapiens]
          Length = 109

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 37/58 (63%)
 Frame = +3

Query: 381 LRFKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLADCMRKLRNMI 554
           +RF + +A W+   IR+++L     ++ K+G L+I S  TR+Q+ N+ D + KL+ +I
Sbjct: 1   MRFNVKNAYWLSDRIREKILLTEKNRINKDGELVISSTKTRTQKGNIDDALEKLQAII 58


>At5g36170.3 68418.m04360 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 391

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +3

Query: 294 IPIQKLDISYSASSGPGGQNVNKVHTKV 377
           IP + LDIS++ + G GGQNVNKV T V
Sbjct: 314 IPEEDLDISFTRAGGKGGQNVNKVETAV 341


>At5g36170.2 68418.m04359 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 455

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +3

Query: 294 IPIQKLDISYSASSGPGGQNVNKVHTKV 377
           IP + LDIS++ + G GGQNVNKV T V
Sbjct: 313 IPEEDLDISFTRAGGKGGQNVNKVETAV 340


>At5g36170.1 68418.m04358 peptide chain release factor, putative
           similar to SP|P28367 Peptide chain release factor 2
           (RF-2) {Bacillus subtilis}; contains Pfam profiles
           PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
           domain
          Length = 456

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +3

Query: 294 IPIQKLDISYSASSGPGGQNVNKVHTKV 377
           IP + LDIS++ + G GGQNVNKV T V
Sbjct: 314 IPEEDLDISFTRAGGKGGQNVNKVETAV 341


>At3g62910.1 68416.m07067 peptide chain release factor, putative
           similar to peptide chain release factor 1 [Escherichia
           coli] GI:147567; contains Pfam profiles PF00472:
           Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain
          Length = 422

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +3

Query: 249 TPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLRFKLS 398
           T A  P+ +E     I  + ++++ + S G GGQNVNKV T +DL  K S
Sbjct: 258 TVAIMPEADE-VEVVIDPKDIELTSARSGGAGGQNVNKVETAIDLFHKPS 306


>At2g15320.1 68415.m01747 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 382

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/107 (21%), Positives = 48/107 (44%)
 Frame = +3

Query: 207 SLETLYPNSSLKLTTPAFKPDGNEKFSGFIPIQKLDISYSASSGPGGQNVNKVHTKVDLR 386
           S+ +L    +L L + +F     +  +    ++ +DIS+++ +GP  + +N +     L 
Sbjct: 119 SISSLTSLKTLILRSNSFSGSLPDSVTRLNSLESIDISHNSLTGPLPKTMNSLSNLRQLD 178

Query: 387 FKLSDADWIHPDIRQRMLELYDKKLTKEGYLIIKSDCTRSQQLNLAD 527
              +      P + + +++L  K  T  G  I K   T S QL + +
Sbjct: 179 LSYNKLTGAIPKLPKNLIDLALKANTLSG-PISKDSFTESTQLEIVE 224


>At5g54000.1 68418.m06717 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to  Flavonol synthase (EC
           1.14.11.-) (FLS) from Lisianthus russellianus] {Eustoma
           grandiflorum} [SP|Q9M547], Leucoanthocyanidin
           dioxygenase (LDOX) (Leucoanthocyanidin hydroxylase)
           (Anthocyanidin synthase) from Malus spp. [SP|P51091];
           contains Pfam profile PF03171: oxidoreductase,
           2OG-Fe(II) oxygenase family
          Length = 349

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 243 LTTPAFKPDGNEKFSGFIPIQKLDI----SYSASSGPGGQNVNKVHTKV 377
           L TP    +G++ F+G +P  K+ I       +SS  G + ++K+H+ +
Sbjct: 24  LYTPTGDGEGDQPFNGLLPEMKISIIDLNLLFSSSDDGREELSKLHSAI 72


>At4g13810.1 68417.m02140 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 741

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 309 LDISYSASSGPGGQNVNKVHTKVDLRFKLSDADWI 413
           LD+SY+  +  G  ++  ++   D+  KLS   WI
Sbjct: 103 LDLSYNDFTSEGPDSMGNLNRLTDMLLKLSSVTWI 137


>At2g39120.1 68415.m04806 expressed protein
          Length = 387

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 147 IKNATCTALLQRPLGYKSSISLET 218
           +KN TCTA+L+ P  Y+   S+ET
Sbjct: 320 MKNKTCTAILREP--YRDKASVET 341


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,995,530
Number of Sequences: 28952
Number of extensions: 212809
Number of successful extensions: 581
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)