Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m17
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           27   0.13 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.1  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    23   2.1  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    23   2.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.6  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   6.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.4  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = +3

Query: 384 RNFVPEIQ*LFLSPSICRCPSRQ----GQEREG--PGSPS--AARQVPRRSEVRGRTEPH 539
           R+F   IQ L++   IC           QE  G  PG  +  A R+ PR ++ + R EP 
Sbjct: 271 RHFPERIQSLWVLEKICTTTDAAEFLAAQEIPGQNPGEKTNIAPRERPRATDHQRRNEPK 330

Query: 540 RRRPESHR 563
           R RP   R
Sbjct: 331 RPRPNIDR 338


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 396 PEIQ*LFLSPSICRCPSRQGQEREGP 473
           P  Q  +   + C CP+ Q  ER GP
Sbjct: 279 PRSQRRYTGRATCDCPNCQEAERLGP 304


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 363 VNKGTSFGVFGVQTAAFGVLV 301
           +NK T  G+FG  T  F V++
Sbjct: 351 INKATLCGIFGTTTTYFIVIL 371


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 363 VNKGTSFGVFGVQTAAFGVLV 301
           +NK T  G+FG  T  F V++
Sbjct: 351 INKATLCGIFGTTTTYFIVIL 371


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 331 GTDCCLWRTCSPSR 290
           G  CC  RTCS ++
Sbjct: 187 GNKCCCLRTCSSAK 200


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 363 VNKGTSFGVFGVQTAAFGVLV 301
           +++GT FG+    T+ F +++
Sbjct: 285 IDRGTFFGILSTTTSYFIIMI 305


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 447 RQGQEREGPGSPSAARQVPRRSEVRGRTE 533
           R+G+   G   P  +  +P++ EV+   E
Sbjct: 194 RKGRGAIGAYGPEKSASIPKKKEVKEEIE 222


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 80  PSTCTTFPALRPAGLYC 130
           PS     PAL PAG  C
Sbjct: 155 PSIIDPGPALPPAGFLC 171


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,826
Number of Sequences: 336
Number of extensions: 2717
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)