Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m17
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 64 2e-11
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 62 5e-11
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 47 3e-06
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 28 0.95
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 28 1.3
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 27 2.2
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 26 3.8
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.7
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 8.9
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 8.9
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 8.9
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 63.7 bits (148), Expect = 2e-11
Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Frame = +1
Query: 190 EQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKYAKGSSL-YPEDPKARAL 357
EQ PE+L LNP VPTL+D + +IWES AI+ YL +KY + P D
Sbjct: 40 EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYK 99
Query: 358 VDQRLYFDI---GTLYQRFSDY-FYPQVFAGAPADKAKNEKVQEALQLLDKFLEGQKYVA 525
V Q L+F G ++ + + Y Q + + +NE ++ L +L+ L+ + Y+
Sbjct: 100 VIQYLFFQASGQGIIWGQAGWFSVYHQELVISAITRYRNE-IKRVLGVLEDILKDRDYLV 158
Query: 526 GPNLTVADLSLIASVSSLE 582
T+ADLS I+ + LE
Sbjct: 159 ANRFTIADLSFISWNNFLE 177
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 62.5 bits (145), Expect = 5e-11
Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
Frame = +1
Query: 187 GEQLKPEYLKLNPQHTVPTLVD---DGLSIWESRAIITYLVNKY--AKGSSLYPEDPKAR 351
GEQ E+L LNP VPTLVD + +IWES AI+ YL +KY + SL +DP+
Sbjct: 39 GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKYDTDRKISLSFDDPEYY 98
Query: 352 ALVDQRLYFDI---GTLYQR--FSDYFYPQVFAGAPADKAKNEKVQEALQLLDKFLEGQK 516
L+ Q L+F G ++ + + ++F+ + A + +NE ++ L +L+ L+ +
Sbjct: 99 KLI-QYLFFQASGQGVIWGQAGWFNFFHHEPVVSA-VTRYRNE-IKRVLGVLEDILKDRD 155
Query: 517 YVAGPNLTVADLSLI 561
Y+ T+ADLS I
Sbjct: 156 YLVANKYTIADLSFI 170
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 46.8 bits (106), Expect = 3e-06
Identities = 40/157 (25%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Frame = +1
Query: 202 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFD 381
P Y KL+P P +VDDG++ ES AI+ +LV KY G S P + L L+
Sbjct: 40 PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKY--GPSFKPSEEDVAELEKYELWMH 97
Query: 382 IG--------------TLYQRFSDYFYPQV---FAGAPADKAKNEKVQEALQLLDKFLEG 510
L + F+ + F K +++ L +D L
Sbjct: 98 FSEASLMPFIWASHVLDLSVNMTPIFFRYIVRQFVNGIKSKYLSKETFLNLDYIDNHLAS 157
Query: 511 QKYVAGPNLTVADLSLIASVSSLEASDIDFKKYANVK 621
+Y AG T AD + + + + + K Y N+K
Sbjct: 158 NEYFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIK 194
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 28.3 bits (60), Expect = 0.95
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = -1
Query: 611 AYFLKSMSEASRLETLAMRLRSATVRFGPATYF*PSRNLSSS*RASWTFSFLALSAGAPA 432
A F M+ +++ T M + RF A+ S +SSS ++WT+ LS+GA +
Sbjct: 19 AAFALLMAIITKVLTACMGQTQNSERFSTASRSVKSGLISSSTVSAWTWPATLLSSGAWS 78
Query: 431 NTWG 420
T+G
Sbjct: 79 YTYG 82
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 1.3
Identities = 34/118 (28%), Positives = 52/118 (44%)
Frame = +1
Query: 253 DGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVF 432
+ LSI ESR I + ++ S L+P D K A + RL F +G + R + +
Sbjct: 263 NSLSI-ESRLTIANMTTEWGALSGLFPTDEKLLAWYEDRLKF-LGPNHPRVNRETLDAIK 320
Query: 433 AGAPADKAKNEKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSSLEASDIDFKK 606
A +P +E A L+ V+GPN + + S ++LE DI KK
Sbjct: 321 A-SPI--LADEGAFYAKHLILDLSTLSPAVSGPN----SVKVYNSAATLEKKDILIKK 371
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 450 QGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQCL 572
+G+E EGP S +A R R +++G ++ P H+ +
Sbjct: 307 EGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMI 347
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 408 TESLVQSSDVEIQPLVNKGTSFGVF 334
TE V SS + PL+N G S F
Sbjct: 156 TEKFVASSSMNANPLINSGNSISPF 180
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 496 KFLEGQKYVAGPNLTVADLSLIASVSSLEASDI 594
+F Q+Y+ + DL ++A SLEA DI
Sbjct: 459 EFQSTQRYLVLSEIGETDLDILAEPKSLEACDI 491
>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +3
Query: 216 VEPSTHGPDPSRRWSFNLGVPRHHHLLGE 302
+ H P PS R+ F L + HH E
Sbjct: 85 ISDGLHVPHPSNRFDFALSIAVIHHFSNE 113
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 153 KPEPQTGRPTPRGTAQTRIFEVEPSTHGPDPSRRWSFNLGVPRHHHL 293
+P+P TG P PR T+ E E D + + NL P + +L
Sbjct: 380 QPQPNTGSPFPRFTSTNTEDEQESDIPQSDANDS-TVNLNQPNYANL 425
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 477 SPSAARQVPRRSEVRGRTEPHRRRPES 557
+PSAA +VP++ + + +P RR S
Sbjct: 115 TPSAASEVPKKKYKKIKVDPSARRTSS 141
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 430 FAGAPADKAKNEKVQEALQLLDKF-LEGQKYVA 525
F AP D ++ KV+ LQL D+F E KY A
Sbjct: 118 FIVAPLDLFRDSKVKPLLQLNDRFKAEQAKYDA 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,574
Number of Sequences: 5004
Number of extensions: 44015
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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