Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m17
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 48 5e-06
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26) 42 5e-04
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12) 33 0.25
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_7166| Best HMM Match : RBM1CTR (HMM E-Value=7.6) 29 2.3
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 29 4.1
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 28 5.4
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 28 5.4
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 28 5.4
SB_21789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 28 7.1
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22) 28 7.1
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 27 9.4
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013) 27 9.4
SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
Length = 260
Score = 48.4 bits (110), Expect = 5e-06
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Frame = +1
Query: 217 LNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLY 396
L+P +T+P L + + S II YL A LY D R VDQ + DI T
Sbjct: 43 LSPFNTLPLLETKEGTFFSSNTIIRYLA---ASSDKLYGSDLFQRGQVDQ--WLDITTCD 97
Query: 397 QRFSDYFYPQVFAGAPADKAKN-EKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVS 573
+ G + AK + + L ++K L G+K++ G ++T+AD S+ S++
Sbjct: 98 FEAAVAAVAIAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIA 157
Query: 574 SLEAS--DIDFKKYANV 618
+ S D D K Y N+
Sbjct: 158 VILTSLGDEDRKPYQNI 174
>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
Length = 492
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +1
Query: 202 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARA 354
PE+L +NP VP +V +G +++ES I ++ ++ ++ P+DP RA
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349
>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
Length = 521
Score = 32.7 bits (71), Expect = 0.25
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 153 KPEPQTGRPTPRG-TAQTRIFEVEPSTHGPDP 245
+PEP+T P PR +TR + +P T+ PDP
Sbjct: 289 RPEPRTELPQPRTYRPETRTYRPDPRTYRPDP 320
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 153 KPEPQTGRPTPR-GTAQTRIFEVEPSTHGPDP 245
+P P+T RP PR Q R + E T+ PDP
Sbjct: 282 RPRPKTRRPEPRTELPQPRTYRPETRTYRPDP 313
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 456 QEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQ 566
+E + P P++ Q RR+ R RT H+R +SHR+
Sbjct: 1386 RELQLPSLPTSGPQYERRTLPRRRTSHHQRHTQSHRK 1422
>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 31.1 bits (67), Expect = 0.76
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Frame = +1
Query: 199 KPEYLKLNP--QHTVPTLVD-DGLSIWESRAIITYLVNKYAKGSSLYPEDPKARA 354
KPE+ + +P + VPTL DG I ES I +L + Y K LYP DP A++
Sbjct: 65 KPEWFQTHPDCEGKVPTLETMDGKLIPESVIICEFLEDYYRK-IPLYPCDPYAKS 118
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 441 PSRQGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQCLQPG 581
PSR GQ+ + P P Q P RS V+ +P R ++ + QPG
Sbjct: 589 PSRPGQQHQQPFRPEQQPQQPFRS-VQPPQQPFRADQQTQQPFHQPG 634
>SB_7166| Best HMM Match : RBM1CTR (HMM E-Value=7.6)
Length = 147
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 447 RQGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRP 551
R+ Q++ G G+PS ARQ R G P R P
Sbjct: 97 RRSQQQHGQGNPSRARQQARLQPDEGYPGPSYREP 131
>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 412
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +3
Query: 432 CRCPSRQGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQCLQP 578
C+ P+ Q R PG A +R + G T P+ P ++ + P
Sbjct: 52 CQTPAAASQARPAPGRAPARNPAQQRVNLPGYTSPYGFSPYGKKKSVVP 100
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 159 EPQTGRPTPRGTAQTRIFEVEPSTHGP 239
EP+T R + R T Q I E EP GP
Sbjct: 208 EPKTRRTSRRRTKQEEIVEEEPKQEGP 234
>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 298 VNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSD 411
V KY KG+ DP A V+ + +FD+G +++ FSD
Sbjct: 309 VEKYLKGTKRV--DPSLNAAVNGQ-FFDLGLMHKYFSD 343
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +3
Query: 417 LSPSICRCPSRQGQEREGPGSPSAARQV 500
+SP + + P+R+G++R+ G P A+ ++
Sbjct: 716 VSPGVPKTPARRGRKRKAEGDPKASYKI 743
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +1
Query: 301 NKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPA 447
N + SSL + P A L Q+LY + LYQ YP F G P+
Sbjct: 293 NGEVEKSSLPMDSPYALMLQQQQLYLQLQVLYQN-----YPCQFVGLPS 336
>SB_21789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 438 CPSRQGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQCL 572
C R + R+G S AR P + RGR +P R+ HR+ L
Sbjct: 14 CIVRNHRPRDGQQSRRTARSPPHSTTDRGRRDPSRK--GMHRKLL 56
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 441 PSRQGQERE-GPGSPSAARQVPRRSEVRGRTEPHRRRP 551
PS R+ GP SP +RQ P S R P RRP
Sbjct: 421 PSSPSPRRQTGPPSPKPSRQPPPSSPQRIAPTPGHRRP 458
>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
Length = 774
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 277 RAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLY 396
R I+Y+ N+Y+K ++ Y E A +Y D LY
Sbjct: 302 RGGISYIANRYSKANNKYMESYDETAPSKYFMYLDANNLY 341
>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
Length = 1259
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 272 SQIERPSSTRVGTVC*GFNFKYSGLSCSPWCRST 171
S I+RP TR + F GL C PW + T
Sbjct: 989 SVIDRPLHTRPRSALRRQRFALPGLGCYPWSKQT 1022
>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
Length = 1105
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 202 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVD 363
P Y+ HTV T + S+ E TY YA G ++ PE+ ++D
Sbjct: 1052 PRYVSTWNPHTVLTYLKSLPSLREKLTKATYSEAGYAYGPAVSPENSNTTDIID 1105
>SB_40843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 399 LVQSSDVEIQPLVNKGTSFGVFGVQTAAFGVLVHQVGDDGAGL 271
LV ++ ++ G + + G+ AFGV +GD GAGL
Sbjct: 202 LVLKGTAQLSNALSIGATLKMEGIWRKAFGVSFLSIGDLGAGL 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,957,618
Number of Sequences: 59808
Number of extensions: 369122
Number of successful extensions: 1399
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -