Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m16
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    61   1e-10
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    29   0.54 
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.2  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.9  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   5.0  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    25   8.8  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   8.8  

>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +3

Query: 342 SQIMKYGFPG-LDNIRSYDDYVLSYDRRTRVPHWVFEHLTKAHIAKNDQVDRSKCDFMPD 518
           ++  +YG PG + + R    Y+  +DRRTR P +  E +T+  + +  + +R   +F+PD
Sbjct: 61  TKFFQYGIPGPVADQRVNHGYMSVFDRRTRNPFYTAETITQESLNQR-KGNRRYSEFVPD 119

Query: 519 ESIHPFFRSLNSDYKGSGFDRGHMAAAGN 605
           ++I   F++   DY+GSG+DRGH   A +
Sbjct: 120 DNIPEMFQAKLGDYRGSGYDRGHQVPAAD 148


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 192 LYNIQSSR*HLIELNETLFYESSFLTKYCKPQLIQELHR 76
           LYN ++ +  L++   ++ Y+  F+ KYC+  L+   HR
Sbjct: 461 LYNGKTKKIELLDFGASIEYDEKFIKKYCR-LLLAAAHR 498


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
 Frame = -2

Query: 195 VLYNIQSSR*HLIELNE--TLFYES-----------SFLTKYCKPQLIQELHRK*CFDLY 55
           V YN+++ +  L E++E  T+ YE            SF+ KY +P LI E   + C + +
Sbjct: 6   VFYNLENEKQFLAEIDELLTIPYEKNELEIGVSKFLSFINKYGEPYLITEFQLQRCMEKF 65

Query: 54  L 52
           L
Sbjct: 66  L 66


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 360 GFPGLDNIRSYDDYVLSYDRRTRVPHWV 443
           GFPGL+++ SY+    +      +P+W+
Sbjct: 371 GFPGLNSLSSYEGNFEASFSNASMPYWI 398


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +3

Query: 303 YTESGGSKDTTRVSQIMKYGFPGLDNIRSYDDYVLSYDRRTRVPHWVFEHLTKAHIAKND 482
           + E+ G+KD T  S      +PG  +    +     Y+   +V  W++EH   +   K++
Sbjct: 230 FYENAGTKDKTYQS------YPGFYHSLHIEKKPEVYEYLDKVAAWIYEHSKPSETVKSE 283

Query: 483 Q 485
           Q
Sbjct: 284 Q 284


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
 Frame = -2

Query: 531 DVYFHQA*SHIYSYQPDHFWQCVLLLNVQKPSVVLLCDGRKTTHNHHMNEY--CRGRGSH 358
           D Y +      Y +   H +   ++  +    +  +  G   TH    +++  C G G  
Sbjct: 346 DPYIYGRGGEEYLFFTQHGYVPTVIPGISSALMAPISAGIPVTHRGVADQFLVCTGTGQK 405

Query: 357 ISLFEIP*LCPSNHHFQCMARRQTQFRTQAMLVS 256
            S+ +IP   P+      MA  + +   QA++ S
Sbjct: 406 GSMPKIPSFVPTQTTVFLMALHRLEILVQALIES 439


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 137 KSVSFSSIKCYRLDWILYRTMQW 205
           K+VS  +IK  +L+W+     QW
Sbjct: 547 KAVSMGNIKVVKLNWLTESLSQW 569


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,987
Number of Sequences: 5004
Number of extensions: 58318
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)