Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m16
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0249 + 32638112-32639140 32 0.42
05_05_0100 + 22388457-22388561,22388657-22388808,22388897-223892... 31 0.97
05_05_0099 - 22381586-22382604,22382683-22383056,22383145-223832... 31 0.97
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 30 1.7
03_01_0257 + 1994645-1995061 29 2.2
01_01_0245 + 2013821-2014171,2014278-2014671,2015158-2015289,201... 29 3.0
10_08_0748 - 20277623-20277736,20277956-20279425 29 3.9
05_01_0320 - 2524700-2524810,2525075-2525183,2525607-2525683,252... 29 3.9
03_01_0168 + 1382531-1383931,1384028-1384150 28 6.8
02_05_0746 - 31451303-31453168,31453243-31453357,31454296-314543... 28 6.8
01_06_0390 - 28938485-28938751,28939924-28941282 28 6.8
01_05_0566 + 23329205-23329687 28 6.8
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 27 9.0
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 27 9.0
04_04_0895 - 29168107-29168229,29168617-29170068 27 9.0
>03_06_0249 + 32638112-32639140
Length = 342
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -2
Query: 528 VYFHQA*SHIYSYQPDHFWQCVLLLNVQKPSVVLLCDGR 412
VYFH I S++ D+F C L L + P+VVL D R
Sbjct: 81 VYFHGGGYFIGSFEMDNFHACCLRLAHELPAVVLSADYR 119
>05_05_0100 +
22388457-22388561,22388657-22388808,22388897-22389270,
22389349-22390367
Length = 549
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 246 LLTSLPALPVFGTVSAAVPYTESGGSKDTTRVSQIMKYGFP 368
LLT+ P P A PYT + G+ D T V+ +++Y P
Sbjct: 274 LLTAKPTYPGASYYMLARPYTTTQGTFDNTTVAGVLEYDDP 314
>05_05_0099 -
22381586-22382604,22382683-22383056,22383145-22383296,
22383392-22383496
Length = 549
Score = 30.7 bits (66), Expect = 0.97
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 246 LLTSLPALPVFGTVSAAVPYTESGGSKDTTRVSQIMKYGFP 368
LLT+ P P A PYT + G+ D T V+ +++Y P
Sbjct: 274 LLTAKPTYPGASYYMLARPYTTTQGTFDNTTVAGVLEYDDP 314
>07_01_0242 +
1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +3
Query: 210 NTTQDCIEVDGKLLTSLPALPVFGTVSAAVPYTESGGSKDTTRVSQIMKYGFPGLDNIRS 389
+T + C+ + LL S P ++ A+ Y + G K + + +G + +
Sbjct: 587 DTDEACLVLKLGLLCSHPVPQARPSMRQAMQYLD-GDMKMPELIPANLSFGMQAMMSNEG 645
Query: 390 YDDYVLSYDRRTRVPHWVF 446
+D Y++SY + V H F
Sbjct: 646 FDSYMMSYPSSSMVSHGTF 664
>03_01_0257 + 1994645-1995061
Length = 138
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 486 VDRSKCDFMPDESIHPFFRSLN 551
VD S+ F P++ I PFF +LN
Sbjct: 47 VDESRLRFAPEDKIRPFFETLN 68
>01_01_0245 +
2013821-2014171,2014278-2014671,2015158-2015289,
2015747-2015788,2016096-2017057
Length = 626
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 279 GTVSAAVPYTESGGSKDTTRVSQIMKYGFPGLDNIRSYDDYVLSYDRRTRV-PHWVFEHL 455
GT+ P S G + S + YG L+ + + + D + P+W+++HL
Sbjct: 528 GTIGFIAPEVFSRGFGVVSTKSDVYSYGMMLLEMVEGRKNVKTNTDNSSAYFPNWIYDHL 587
Query: 456 TK 461
K
Sbjct: 588 AK 589
>10_08_0748 - 20277623-20277736,20277956-20279425
Length = 527
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 252 TSLPALPVFGTVSAAVPYTESGGSKDTTRVSQIMKYGFP-GLDNIR 386
T LP + V S PYT GS+ R+S+I+ F GL +R
Sbjct: 157 TGLPPIMVSSDTSK-FPYTHGAGSRSALRISRIVSETFRLGLPGVR 201
>05_01_0320 -
2524700-2524810,2525075-2525183,2525607-2525683,
2525795-2525873,2526058-2526147,2526779-2526903,
2527288-2527468,2527712-2527905,2528008-2528411,
2528519-2528605,2528802-2529582
Length = 745
Score = 28.7 bits (61), Expect = 3.9
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +3
Query: 411 YDRRTRVPHWVFEHLTKAHI 470
+D+R+++P W+ HL AH+
Sbjct: 677 HDKRSKLPGWILSHLHDAHL 696
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 252 TSLPALPVFGTVSAAVPYTESGGSKDTTRVSQIMKYGF 365
T LP + + G + PYT GS+ R+++I+ F
Sbjct: 134 TGLPGIKISGNTTK-FPYTHGRGSRSALRITRIVSESF 170
>02_05_0746 -
31451303-31453168,31453243-31453357,31454296-31454351,
31455057-31455138,31455484-31455517,31455912-31456016,
31456108-31456387
Length = 845
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 101 GLQYFVKNDDS*KSVSFSSIKCYRLDWI 184
GL VK+DD+ + +S S+ C R DW+
Sbjct: 486 GLLLSVKDDDNWQRISVLSVFCDRPDWL 513
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 350 YLRYPSCVLRTTTFSVWHGGRHSSE-HRQ 267
Y+ YPSCV+ + ++ G R SE HR+
Sbjct: 495 YVSYPSCVVHASMGTIGDGQREESERHRE 523
>01_05_0566 + 23329205-23329687
Length = 160
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +3
Query: 246 LLTSLPALPVFGTVSAAVPYTESGGSKDTTRVSQIMKYGFP-GL--DNIRSY 392
LL + AL + + + V +++GG D T ++ GFP GL N+R Y
Sbjct: 11 LLAAAAALFLLASAALPVVRSDAGGDGDVTAYDELRHRGFPLGLLPANVRGY 62
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 351 LFEIP*LCPSNHHFQCMARRQTQF--RTQAMLVSSSGVYHRPLYNLE 217
LF+ P CP HFQ + Q ++ +T + V+ G Y P + +
Sbjct: 140 LFQNPMRCPGALHFQVINDTQIKYGIQTNSTPVARRGTYEDPTFKFQ 186
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 432 PHWVFEHLTKAHIAKNDQVDRSKCDFMPDESIHPFFRSL 548
PH +FE L KA A + + + F P HP +++L
Sbjct: 665 PHQLFEELNKAKQAAASKKQKLQLLFCPMSDQHPGYKTL 703
>04_04_0895 - 29168107-29168229,29168617-29170068
Length = 524
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 252 TSLPALPVFGTVSAAVPYTESGGSKDTTRVSQIMKYGFP-GLDNIR 386
T LPA+ + S PYT G + R+S+I+ F GL +R
Sbjct: 145 TGLPAIRISSDTSG-FPYTHRRGHRSAIRISRIVSETFRLGLPGVR 189
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,984
Number of Sequences: 37544
Number of extensions: 353798
Number of successful extensions: 734
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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