Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m16
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)             79   4e-15
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       36   0.026
SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)                  29   3.0  
SB_7144| Best HMM Match : DUF834 (HMM E-Value=2.8)                     28   5.3  
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         28   7.0  
SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)           28   7.0  
SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     27   9.2  

>SB_21142| Best HMM Match : Endonuclease_NS (HMM E-Value=0)
          Length = 387

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
 Frame = +3

Query: 171 GLTGYYIGQCNGKNTTQDCIEVDGKLLTSLPALPVFGTVSAAVPYTESGGSKDTTRVSQI 350
           GLT  Y    N  +  +D  +   + L        FG     +   +SG S     +S  
Sbjct: 26  GLTKIYYETTNDSDKLEDNTKKQIRRLVKKYENLKFGEKLRTIDTVDSGESFPGDLISS- 84

Query: 351 MKYGFPGLDN-IRSYDDYVLSYDRRTRVPHWVFEHLTKAHIAKNDQVDRSKCDFMPDESI 527
             YG P        Y ++VL YD+  ++P WV+EH+T   +    + +RS+CDF PD ++
Sbjct: 85  --YGLPRRSTEFIQYRNHVLCYDQARKIPRWVYEHVTADKL--KGEGERSRCDFRPDLNV 140

Query: 528 HPFFRSLNSDYKGSGFDRGHMAAAGNHR 611
              F++ N DY G G+ RGHMA A + R
Sbjct: 141 PAIFQATNEDYLGRGWSRGHMAPAADCR 168


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 24/71 (33%), Positives = 31/71 (43%)
 Frame = +3

Query: 396  DYVLSYDRRTRVPHWVFEHLTKAHIAKNDQVDRSKCDFMPDESIHPFFRSLNSDYKGSGF 575
            +Y+  Y    R+P WV   L      K+DQ    K  F  D  +     S  + Y  SGF
Sbjct: 1283 EYLTGYSTYLRLPLWVGYRLDGE---KSDQTLPRKDCFRHDVRLTNAQASTCTHYYKSGF 1339

Query: 576  DRGHMAAAGNH 608
            DRGHM    +H
Sbjct: 1340 DRGHMVPNADH 1350


>SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
          Length = 241

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +3

Query: 96  TVAYNISLKTMIRKKVFHLAQLSAIGLTGY---YIGQCNGKNTTQDCIE 233
           T  YN  +    R K F L + S I  TG+   Y  +C   NT +  I+
Sbjct: 39  TTEYNAPIGHFRRSKTFFLRKTSVINRTGFAMSYFKECKYTNTDEQIID 87


>SB_7144| Best HMM Match : DUF834 (HMM E-Value=2.8)
          Length = 497

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 152 SSIKCYRLDWILYRTMQW*KYYSRLYRGRW 241
           S ++C R  W  YRT+Q  + ++   RGRW
Sbjct: 427 SDLECLRQVWTTYRTVQ--EQHTEWKRGRW 454


>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 84  VPELTVAYNISLKTMIRKKVFHLAQLSAIGLTGYYIGQ---CNGKNTTQDCIEVDGKLL 251
           +PEL   Y+I   T       H   ++A+GL G  +G+    +G+ T +DCI +  K L
Sbjct: 695 LPELNKTYDIIKLTTSSIVNCHQQAIAAVGLPG--LGEDTLLDGRYTLKDCIHIHLKFL 751


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 462  LLLNVQKPSVVLLCDGRKTTHNHHMNEYCRGRGSHISLFE 343
            +L+  +K  V ++CD  +  H+ H+N   +G  S    FE
Sbjct: 1078 VLMRFRKEEVAVMCDVEQMFHSFHVNPRTQGTFSGFFWFE 1117


>SB_26867| Best HMM Match : Acyltransferase (HMM E-Value=4.4)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +3

Query: 426 RVPHWVFEHLTKAHIAKNDQVDRSKCDFMPDESIHPFFRSLNSD--YKGSGFDRGHMAAA 599
           R+   ++ HL+++  A N QV+   C F  +   H F R+ + D  Y GS  D     A 
Sbjct: 65  RISCGIYTHLSRSAAATNHQVEIISCVF--NHVTHWFVRATSRDTAYDGSSEDEQRANAI 122

Query: 600 GNHR 611
            +++
Sbjct: 123 NDNK 126


>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 459 KAHIAKNDQVDRSKCDFMPDESIHPFFRSLNSDYKGSGF 575
           K H+  N  +++S C+ + +++ HP   +L    KG GF
Sbjct: 125 KGHVDLNSYINKSGCECLNEDNEHPLNDALT---KGPGF 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,743,426
Number of Sequences: 59808
Number of extensions: 430036
Number of successful extensions: 1000
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)