Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m16
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 proteas...   122   3e-28
AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 proteas...   122   3e-28
AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z72506-6|CAA96615.1|  182|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine r...    27   8.1  

>AF390558-1|AAK72007.1|  308|Caenorhabditis elegans ced-3 protease
           suppressor 6 protein.
          Length = 308

 Score =  122 bits (293), Expect = 3e-28
 Identities = 53/104 (50%), Positives = 72/104 (69%)
 Frame = +3

Query: 300 PYTESGGSKDTTRVSQIMKYGFPGLDNIRSYDDYVLSYDRRTRVPHWVFEHLTKAHIAKN 479
           P + +  +   +R ++IMK+G+PG  N+R+Y+D+VLSYD +TR  HWV EHLT   +   
Sbjct: 53  PASLNADAMGPSRSAEIMKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHA 112

Query: 480 DQVDRSKCDFMPDESIHPFFRSLNSDYKGSGFDRGHMAAAGNHR 611
           + VDR  C+F PD +    F S N+DYK SGFDRGH+AAAGNHR
Sbjct: 113 EGVDRKLCEFKPDITFPQKFLSQNTDYKCSGFDRGHLAAAGNHR 156


>AF003740-4|AAL08030.1|  308|Caenorhabditis elegans Ced-3 protease
           suppressor protein 6 protein.
          Length = 308

 Score =  122 bits (293), Expect = 3e-28
 Identities = 53/104 (50%), Positives = 72/104 (69%)
 Frame = +3

Query: 300 PYTESGGSKDTTRVSQIMKYGFPGLDNIRSYDDYVLSYDRRTRVPHWVFEHLTKAHIAKN 479
           P + +  +   +R ++IMK+G+PG  N+R+Y+D+VLSYD +TR  HWV EHLT   +   
Sbjct: 53  PASLNADAMGPSRSAEIMKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHA 112

Query: 480 DQVDRSKCDFMPDESIHPFFRSLNSDYKGSGFDRGHMAAAGNHR 611
           + VDR  C+F PD +    F S N+DYK SGFDRGH+AAAGNHR
Sbjct: 113 EGVDRKLCEFKPDITFPQKFLSQNTDYKCSGFDRGHLAAAGNHR 156


>AC024808-5|AAK29931.1|  789|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.8 protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 546 LNSDYKGSGFDRGHMAAAGNH 608
           L+S YKG+  D  H A  GNH
Sbjct: 313 LSSKYKGTSLDTDHTAYPGNH 333


>Z72506-6|CAA96615.1|  182|Caenorhabditis elegans Hypothetical
           protein F07A5.5 protein.
          Length = 182

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +3

Query: 204 GKNTTQDCIEVDGKLLT----SLPALPVFGTVSA---AVPYTESGGSKDTTRVSQIMK 356
           GK  T   IE D K LT     + ALP  G + A    V  T + G+K  T+ S+++K
Sbjct: 22  GKIYTSSIIEKDSKRLTINLKKVDALPKCGLIGAPDVCVKITLTQGAKTQTKSSRVIK 79


>AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine
           receptor, class t protein31 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 355 NMASPASTIFVHMMIMCCLTTVAQEYHTGFLNI*Q-KHTLPKMIRLIGVNVTLCLMKVYI 531
           N+   A T F+++M  C L    +  +TG  +  + K    + + + G N+T  L+ VY+
Sbjct: 205 NIIVVAVTCFLYIMFCCALGAEMKNVNTGSESYKRSKQIFIQSVLICGFNLTASLLYVYM 264

Query: 532 H 534
           +
Sbjct: 265 N 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,823,993
Number of Sequences: 27780
Number of extensions: 327465
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)