Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m16
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.2  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 255 SLPALPVFGTVSAAVPYTESGGSKD 329
           SLPA P    VS     T SGG++D
Sbjct: 240 SLPASPADSGVSDVESSTSSGGNED 264


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 359 IFHYLRYPSCV 327
           + H+L+YP CV
Sbjct: 34  VIHFLQYPGCV 44


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 541 LKNGCILSSGIKS 503
           LK GC+L SGI S
Sbjct: 346 LKKGCLLVSGIAS 358


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +3

Query: 534 FFRSLNSDYKGSGFDRGHMAAAGN 605
           FF +++   KG+ + R H   +G+
Sbjct: 19  FFNAISGAIKGNDYQRYHQQISGD 42


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +3

Query: 372 LDNIRSYDDYVLSYDRRTRVPHWVFEHLTKAHIAKNDQVDRSKCDFMP 515
           L  IR+ D  +  +   +RV  WV   + + +   N+  + +   F+P
Sbjct: 253 LGPIRNNDRILYFHSLASRVESWVNTSVIRNYTLFNENSEAAARSFVP 300


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 350 YLRYPSCVLRTTTFSVW 300
           +L YPS VL     S+W
Sbjct: 360 FLVYPSAVLELPGSSIW 376


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 350 YLRYPSCVLRTTTFSVW 300
           +L YPS VL     S+W
Sbjct: 413 FLVYPSAVLELPGSSIW 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,134
Number of Sequences: 438
Number of extensions: 4270
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)