Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m16
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03190.2 68414.m00297 DNA repair protein / transcription fact...    29   2.5  
At1g03190.1 68414.m00296 DNA repair protein / transcription fact...    29   2.5  
At4g11350.1 68417.m01831 fringe-related protein various hypothet...    28   4.3  
At5g22350.1 68418.m02607 expressed protein                             27   7.5  
At2g35600.1 68415.m06030 expressed protein                             27   7.5  
At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative / cel...    27   7.5  
At1g05930.1 68414.m00622 hypothetical protein contains Pfam prof...    27   7.5  
At3g42480.1 68416.m04405 hypothetical protein                          27   10.0 

>At1g03190.2 68414.m00297 DNA repair protein / transcription factor
           protein (UVH6) identical to DNA repair/transcription
           factor protein (UVH6) gi:22651569 gb:AY090788
          Length = 758

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 411 YDRRTRVPHWVFEHLTKAHI 470
           +D+R+++P W+  HL  AH+
Sbjct: 687 HDKRSKLPGWILSHLRDAHL 706


>At1g03190.1 68414.m00296 DNA repair protein / transcription factor
           protein (UVH6) identical to DNA repair/transcription
           factor protein (UVH6) gi:22651569 gb:AY090788
          Length = 758

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 411 YDRRTRVPHWVFEHLTKAHI 470
           +D+R+++P W+  HL  AH+
Sbjct: 687 HDKRSKLPGWILSHLRDAHL 706


>At4g11350.1 68417.m01831 fringe-related protein various
           hypothetical proteins from Arabidopsis thaliana strong
           similarity to unknown protein (pir||T13026) similarity
           to predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 489

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 SLPALPVFGTVSAAVPYTESGGSKDTTRVSQIMKYGFPGLDN 380
           SLP++ + G  S+  PYT   G +   R+S+I+      LD+
Sbjct: 140 SLPSVRISGDTSS-FPYTNKQGHRSAIRISRIVSETLMSLDS 180


>At5g22350.1 68418.m02607 expressed protein
          Length = 427

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 267 LPVFGTVSAAVP-YTESGGSKDTTRVSQIMKYGFPGLDN 380
           LP   ++S  VP   E GGS +  R + ++  GFPG +N
Sbjct: 6   LPDPPSLSTGVPDIFEQGGSHNVVRRAVVIGNGFPGSEN 44


>At2g35600.1 68415.m06030 expressed protein
          Length = 331

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 240 GKLLTSLPALPVFGTVSAAVPYTESGGSKDTT 335
           G   ++L   P F T S +VPY   GGS  +T
Sbjct: 60  GSSSSNLRKFPDFDTASESVPYPYPGGSTSST 91


>At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-1,4-beta-glucanase
           GI:2065530 from [Lycopersicon esculentum]
          Length = 623

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +3

Query: 303 YTESGGS-KDTTRVSQIMKYGFPGLDNIRSYDDYVLSYDRRTRVPHWVFEHLTKAHIAKN 479
           YT+ GG  +D+     I  +  P      SYD  VLS      +   V   L  A I   
Sbjct: 231 YTQVGGGLRDSESPDDIYCWQKP---EDMSYDRPVLSSTSAADLGAEVSAALAAASIVFT 287

Query: 480 DQVDRSKCDFMPDESIHPFFRS 545
           D+ D +K      E+++PFFRS
Sbjct: 288 DKPDYAKKLKKGAETLYPFFRS 309


>At1g05930.1 68414.m00622 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 318

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 129 SSFLTKYCKPQLIQELHR 76
           SSFLT+Y  P++++ LHR
Sbjct: 125 SSFLTEYTHPRMLEVLHR 142


>At3g42480.1 68416.m04405 hypothetical protein
          Length = 138

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 359 IFHYLRYPSCVLRTTTFSVWHGGRHS 282
           +FHY  YP C L    ++ ++GGR S
Sbjct: 98  LFHYEDYPECWLIHEFYNEYNGGRCS 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,724,603
Number of Sequences: 28952
Number of extensions: 294829
Number of successful extensions: 622
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)