Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m13
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical...    30   1.2  
At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical...    30   1.2  
At1g79110.2 68414.m09225 expressed protein                             30   1.6  
At1g79110.1 68414.m09224 expressed protein                             30   1.6  
At3g12920.1 68416.m01610 expressed protein                             28   4.9  
At4g37730.1 68417.m05342 bZIP transcription factor family protei...    27   8.6  
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono...    27   8.6  
At1g18410.1 68414.m02299 kinesin motor protein-related similar t...    27   8.6  

>At2g46270.2 68415.m05754 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 359

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 309 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 446
           E+ ++SR + +  T+E   +V  L AEN  L  ++  L+++   L+
Sbjct: 248 ESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLR 293


>At2g46270.1 68415.m05753 G-box binding factor 3 (GBF3) identical to
           G-box binding factor 3 (GBF3) SP:P42776 from
           [Arabidopsis thaliana]; contains Pfam profile: PF00170
           bZIP transcription factor
          Length = 382

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 309 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLK 446
           E+ ++SR + +  T+E   +V  L AEN  L  ++  L+++   L+
Sbjct: 271 ESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLR 316


>At1g79110.2 68414.m09225 expressed protein
          Length = 355

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 309 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTEL 488
           EA+++   K  +  +E   R+ K+   N  LEE+VK+LS + Q  +DL  AQ  + T   
Sbjct: 184 EAIEQGLVKRLRVKEEERERIGKV---NHALEERVKSLSIENQIWRDL--AQTNEATANH 238

Query: 489 EGIDLNKLFEDLPD 530
              +L  +   + D
Sbjct: 239 LRTNLEHVLAQVKD 252


>At1g79110.1 68414.m09224 expressed protein
          Length = 358

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 309 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDTTEL 488
           EA+++   K  +  +E   R+ K+   N  LEE+VK+LS + Q  +DL  AQ  + T   
Sbjct: 187 EAIEQGLVKRLRVKEEERERIGKV---NHALEERVKSLSIENQIWRDL--AQTNEATANH 241

Query: 489 EGIDLNKLFEDLPD 530
              +L  +   + D
Sbjct: 242 LRTNLEHVLAQVKD 255


>At3g12920.1 68416.m01610 expressed protein
          Length = 335

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +3

Query: 309 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQFLKDLFFAQAKKDT 479
           EAV++   K+ +   +  + + KL   N  LEEKVK+L  + Q  +D+  AQ+ + T
Sbjct: 169 EAVEQGLMKTLRAKDDEINHIGKL---NLFLEEKVKSLCVENQIWRDV--AQSNEAT 220


>At4g37730.1 68417.m05342 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 305

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 309 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLSKQLQ 437
           E+ K+SR + +        +V++L  EN+ L  +++ +  QLQ
Sbjct: 207 ESAKRSRMRKQSHIDNLREQVNRLDLENRELGNRLRLVLHQLQ 249


>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
           splice site at exon 6
          Length = 612

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 309 EAVKKSRFKSKQRTQETFSRVSKLKAENQVLEEKVKTLS-KQLQFLKDLFFAQAKKDTTE 485
           + VKK R     R  E   ++   K E  VLE ++KT+S K+ +   ++   + ++D T 
Sbjct: 252 DGVKKERQAISARINELSEKLKATKDEITVLENELKTVSEKRDKAYSNIHDLRRQRDETN 311

Query: 486 LE 491
            E
Sbjct: 312 SE 313


>At1g18410.1 68414.m02299 kinesin motor protein-related similar to
           kinesin-related protein GB:AAF24855 GI:6692749 from
           [Arabidopsis thaliana]
          Length = 1140

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = +3

Query: 339 KQRTQETFSRVSKLKAENQVLEEKVK---TLSKQLQFLKDLFFAQAKKDT 479
           +Q  QET +  + L+A+N+ LE+ +K   T++  L+  K+    Q+KK+T
Sbjct: 465 EQFKQETMTVTTSLEAQNRELEQAIKETMTVNTSLE-AKNRELEQSKKET 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,148,707
Number of Sequences: 28952
Number of extensions: 186288
Number of successful extensions: 415
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)