Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m12
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0874 - 21205506-21205685,21205825-21205998,21206114-212062...    27   9.5  
09_02_0108 - 4358051-4358645,4358722-4359137,4360307-4360903,436...    27   9.5  
03_06_0674 - 35449373-35449465,35449959-35450112,35450763-354508...    27   9.5  

>10_08_0874 -
           21205506-21205685,21205825-21205998,21206114-21206249,
           21206622-21206794,21207612-21207839
          Length = 296

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +2

Query: 53  VKK*KINEMLRNPKLEEFQMDTKPPRKSFQHKFSD--FLHNDETGTILGRTP-ESWSKIL 223
           VK     EM+ + K    +M+ +   K + H FSD  F ++D      G  P E W K++
Sbjct: 201 VKLPSSEEMMEDVKAFHSKMEARGWPKRYAHNFSDCQFEYDDWLAEQCGHPPIEQWRKLM 260


>09_02_0108 -
           4358051-4358645,4358722-4359137,4360307-4360903,
           4361068-4361139,4361236-4361370,4361485-4361585,
           4362719-4362863
          Length = 686

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = -1

Query: 460 INQLVFPKFIAFISCSLVIY*CTPYISGKGSEAQAWTCTNHTVLLLETRYSGVNELLQEC 281
           IN++   +  AF   +  +Y  T    G  S  +A  C++H+V     +Y  + E + EC
Sbjct: 330 INKVFADENEAFDFYNGYVYMTTARSEGMNSRYKADICSSHSVSAFLAQYERIAETIYEC 389


>03_06_0674 -
           35449373-35449465,35449959-35450112,35450763-35450860,
           35450947-35451234,35451313-35451503,35451789-35452006,
           35452314-35452653,35452726-35453167
          Length = 607

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
 Frame = +2

Query: 284 FLQQFINPRVPRLQQEYSVIGTSPGLGFRPLPADVRST----LIYYKGTGYESYKFWEDQ 451
           +  Q  +P +P    +     T P +G R  P  +       L Y   +  E     +  
Sbjct: 155 YFYQCGDPAIPAAMSDIHAFRTMPAVGPRSYPGKIAIVGDLGLTYNTTSTVEHMVSNQPD 214

Query: 452 LIDFLS--VYKKKGQTAGTGQNIFNCDFRNPPP 544
           L+  L    Y     T GTG + ++C F N  P
Sbjct: 215 LVLLLGDVSYANLYLTNGTGTDCYSCSFANSTP 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,817,786
Number of Sequences: 37544
Number of extensions: 425533
Number of successful extensions: 1045
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)