Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m12
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 31 0.79
SB_7343| Best HMM Match : EGF (HMM E-Value=0) 29 2.4
SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_22263| Best HMM Match : LicD (HMM E-Value=5e-06) 29 4.2
SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3) 29 4.2
SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 29 4.2
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_39323| Best HMM Match : PPR (HMM E-Value=7.8) 28 5.6
SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4) 28 5.6
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 28 5.6
SB_31173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6) 27 9.7
SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5) 27 9.7
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 49.2 bits (112), Expect = 3e-06
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 11/175 (6%)
Frame = +2
Query: 149 FSDFLHNDETGTILGRTPESWSKILVFYTXXXXXXXXXXXXCMVTFLQQFIN-PRVPRLQ 325
F FL+N E G ++GR +SW+KI +F+ + FL + P+L
Sbjct: 24 FKTFLYNKEKGEVMGRNGQSWAKIGLFFLVFYLCLAGFFAAMLSIFLSTLPDRADGPKLT 83
Query: 326 QEYSVIGTSPGLGFRPLPADVRSTLIYYKGTGYESYKFWEDQLIDFLSVYKKKGQTAGTG 505
Q I P L P+P++ K + Y S+ + FL+ Y ++G G
Sbjct: 84 Q---YIAGKPVL--NPVPSNKIEGYDPNKASSYSSH---VSDINSFLNQYVRQG---GAN 132
Query: 506 QNIFNCDFRN-------PPPPGKVCDVDIRSWDPCIEEN---HFSFHKSSPCIFL 640
++ F DF N P K C D+ + PC + + F SPC FL
Sbjct: 133 KDQFAPDFCNGTSGEPRPKDAKKQCRFDLTNLGPCYKNETGFKYGFDTGSPCFFL 187
>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 830
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 638 GRCKVKTCGRRSDSLQCKDPSFGCLRHRPCQGEVD 534
G K CG + SLQ DPSF L P G++D
Sbjct: 7 GNLTFKDCGETAVSLQEPDPSFERLNLNPSVGDID 41
>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
Length = 1233
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 500 TGQNIFNCDFRNPPPPGKVCDVDIRSWDPCIEEN 601
T N+F CDF G +V +RS +PCI N
Sbjct: 102 TNNNLFTCDF------GMKLEVSVRSKEPCINPN 129
>SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2085
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 401 IYYKGTGYESYKFWEDQLIDFLSVYKKKGQTAGTGQNI 514
++Y G GY +Y D+ L+++ +G T +G+ +
Sbjct: 230 VFYPGEGYRNYDTAADEYPSHLNLFSDEGGTYNSGKQV 267
>SB_22263| Best HMM Match : LicD (HMM E-Value=5e-06)
Length = 374
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 393 LLTSAGRGRKPKPGLVPITLYSCWRRGTRG 304
+L + R R+P GLVP LYSC RG
Sbjct: 335 MLIPSPRMRRPYEGLVPDPLYSCHEFTVRG 364
>SB_4935| Best HMM Match : Pox_F16 (HMM E-Value=5.3)
Length = 243
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -3
Query: 494 PSALSSCILTRNQSAGLPKIYSFHILFPCNILVYSLHQREGVGSPSLDLYQSHCTPV 324
PS +S + QS L YSF FP I ++L E V S S+D ++S PV
Sbjct: 177 PSRTNSSKYNQIQSNVLSHSYSF---FPRTIRTWNLLPSEVVESSSIDSFKSSALPV 230
>SB_33076| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 152
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -3
Query: 494 PSALSSCILTRNQSAGLPKIYSFHILFPCNILVYSLHQREGVGSPSLDLYQSHCTPV 324
PS +S + QS L YSF FP I ++L E V S S+D ++S PV
Sbjct: 86 PSRTNSSKYNQIQSNVLSHSYSF---FPRTIRTWNLLPSEVVESSSIDSFKSSALPV 139
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -3
Query: 494 PSALSSCILTRNQSAGLPKIYSFHILFPCNILVYSLHQREGVGSPSLDLYQSHCTPV 324
PS +S + QS L YSF FP I ++L E + S S+D ++S PV
Sbjct: 852 PSRTNSSKYNQIQSNVLSHSYSF---FPRTIRTWNLLPSEVIESSSIDSFKSSALPV 905
>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
Length = 493
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 150 SVIFCIMMRLVLF*VALLKAGLRSWSSIRYSMQHS*LCLQSAW*HSCNSSLTP 308
++ FC + L + L K + +QH+ CL+SA H N+S+TP
Sbjct: 438 ALFFCFLELLDSLAMMLEKESGKVKPEAAIQLQHAASCLRSAPYHQLNNSITP 490
>SB_31373| Best HMM Match : Put_DNA-bind_N (HMM E-Value=8.4)
Length = 198
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -3
Query: 494 PSALSSCILTRNQSAGLPKIYSFHILFPCNILVYSLHQREGVGSPSLDLYQSHCTPV 324
PS +S + QS L YSF FP I ++L E + S S+D ++S PV
Sbjct: 132 PSRTNSSKYNQIQSNVLSHSYSF---FPRTIRTWNLLPSEVIESSSIDSFKSSALPV 185
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -3
Query: 494 PSALSSCILTRNQSAGLPKIYSFHILFPCNILVYSLHQREGVGSPSLDLYQSHCTPV 324
PS +S + QS L YSF FP I ++L E + S S+D ++S PV
Sbjct: 771 PSRTNSSKYNQIQSNVLSHSYSF---FPRTIRTWNLLPSEVIESSSIDSFKSSALPV 824
>SB_31173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 452 LIDFLSVYKKKGQTAGTGQNIFNCDFRNPPPPGKVCD 562
L+DF+ G G N+ DF +PP VCD
Sbjct: 5 LVDFVRHSVTNGAQPRAGINVARYDFSDPPARKDVCD 41
>SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)
Length = 782
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 397 CTPYISGKGSEAQAWTCTNHTVLLLET 317
C PY SG+GS + W T LL++
Sbjct: 305 CHPYTSGRGSTPEGWITTPEIKDLLDS 331
>SB_37560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 506 QNIFNCDFRNPPPPGKVCDVDIRSWDPCIEENHFS 610
+ F C R P P K C + +S C +HF+
Sbjct: 138 ETCFGCGDRRGPHPWKECPANGKSCSKCAGNDHFA 172
>SB_31120| Best HMM Match : Pox_F16 (HMM E-Value=5)
Length = 284
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = -3
Query: 494 PSALSSCILTRNQSAGLPKIYSFHILFPCNILVYSLHQREGVGSPSLDLYQSHCTPV 324
PS +S + QS L YSF FP I ++L + V S S+D ++S PV
Sbjct: 218 PSRTNSSKYNQIQSNVLSHSYSF---FPRTIRTWNLLPAQVVESSSIDSFKSSALPV 271
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -3
Query: 494 PSALSSCILTRNQSAGLPKIYSFHILFPCNILVYSLHQREGVGSPSLDLYQSHCTPVG 321
PS +S + QS L YSF FP I ++L E + S S+D ++S P G
Sbjct: 543 PSRTNSSKYNQIQSNVLSHSYSF---FPRTIRTWNLLPSEVIESSSIDSFKSKVFPEG 597
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,447,991
Number of Sequences: 59808
Number of extensions: 478608
Number of successful extensions: 1101
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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