Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m12
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   5.8  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   5.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 194 DLK*YQSHHYAENH*ICVENS 132
           DL  YQSHH+  +H +  + S
Sbjct: 66  DLPIYQSHHHLHHHQVLYQQS 86


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +2

Query: 395 TLIYYKGTGYESYKFWEDQLIDFLSVYKKKGQTAGTGQNI 514
           T+   +  G   Y+ W  QLI +       G   G   NI
Sbjct: 171 TIFPQRTDGKHDYRVWNHQLISYAGYKNPDGTIIGDPANI 210


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 265 CNLHGDIPATV 297
           C +HGD P TV
Sbjct: 829 CEVHGDTPVTV 839


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 265 CNLHGDIPATV 297
           C +HGD P TV
Sbjct: 825 CEVHGDTPVTV 835


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 443 EDQLIDFLSVYKKKGQTAGTGQNI 514
           E  LI  +  +KK+GQT    QN+
Sbjct: 107 EASLIGLVERHKKRGQTKEEFQNL 130


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 443 EDQLIDFLSVYKKKGQTAGTGQNI 514
           E  LI  +  +KK+GQT    QN+
Sbjct: 107 EASLIGLVERHKKRGQTKEEFQNL 130


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 283  CHHADCKQSYECCIEYRIEDQD 218
            C  +D ++ Y+C + Y   D+D
Sbjct: 1057 CFDSDRERLYDCYVCYSPNDED 1078


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,660
Number of Sequences: 438
Number of extensions: 4939
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)