Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m12
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03260.1 68416.m00322 homeobox-leucine zipper family protein ...    29   2.0  
At4g24090.1 68417.m03459 expressed protein                             28   6.0  
At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identi...    28   6.0  
At5g41260.1 68418.m05015 protein kinase family protein contains ...    27   7.9  
At3g56160.1 68416.m06242 expressed protein                             27   7.9  
At3g07300.1 68416.m00869 eukaryotic translation initiation facto...    27   7.9  
At2g25370.1 68415.m03037 zinc finger protein-related contains we...    27   7.9  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    27   7.9  

>At3g03260.1 68416.m00322 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           L1 specific homeobox gene ATML1/ovule-specific homeobox
           protein A20, GB:CAB36819
          Length = 699

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = -1

Query: 388 YISGKGSEAQAWTCTNHTVLLLETRYSGVNELLQECHHADCKQSYECCIEYRIEDQDLRP 209
           Y SG   +    TC  HT   ++     +    +EC H D +Q  + C E ++E   ++ 
Sbjct: 14  YTSGDAKQNGKRTCHRHTPQQIQR----LEAYFKECPHPDERQRNQLCRELKLEPDQIKF 69

Query: 208 AFRS 197
            F++
Sbjct: 70  WFQN 73


>At4g24090.1 68417.m03459 expressed protein 
          Length = 308

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 490 LPFLLVY*QEINQLVFPKFIAFISCSL 410
           LPF L     + QLV P  IAF SC+L
Sbjct: 193 LPFALSQVASMEQLVLPLGIAFASCAL 219


>At4g15420.1 68417.m02359 PRLI-interacting factor K nearly identical
           to PRLI-interacting factor K [Arabidopsis thaliana]
           GI:11139266; contains Pfam profiles PF03152: Ubiquitin
           fusion degradation protein UFD1, PF00096: Zinc finger,
           C2H2 type
          Length = 561

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 229 LYDILCSTHSSVCNLHG 279
           L+++ CS H+ VCN HG
Sbjct: 417 LHEVYCSRHNVVCNHHG 433


>At5g41260.1 68418.m05015 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 487

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 428 SYKFWEDQLIDFLSVYKKKGQTA 496
           S++ W DQ+ D L V+KKKG +A
Sbjct: 371 SFQMWTDQMQDTL-VFKKKGDSA 392


>At3g56160.1 68416.m06242 expressed protein 
          Length = 436

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 491 TAGTGQNIFNCDFRNPPPPGKVCDVDIRSWDPC 589
           T  + QN F C  R PP PG    V  R  DPC
Sbjct: 6   TLASTQNPFLC-LRQPPSPGNRSVVFRRCQDPC 37


>At3g07300.1 68416.m00869 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           SP|P49770 Translation initiation factor eIF-2B beta
           subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF01008: Initiation factor 2
           subunit family
          Length = 407

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -1

Query: 391 PYISGKGSEAQAWTCTNHTVL--LLETRYSGVNELLQE---CHHADCKQSYE 251
           PY S  G+++++ T    ++   L      GVN+L+QE   CH    +Q+ E
Sbjct: 153 PYTSSSGADSESKTADKSSLTRKLKHDVIEGVNQLIQEIAGCHEQIAEQAIE 204


>At2g25370.1 68415.m03037 zinc finger protein-related contains weak
           similarity to zinc fingers and Pfam:PF01485 IBR domain
          Length = 603

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 298 ELLQECHHADCKQSYECCIEYRIEDQ 221
           EL   C+H  C+  YE C E  IE Q
Sbjct: 474 ELSHGCNHMTCRCGYEFCYECGIEWQ 499


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -1

Query: 295 LLQECHHADCKQSYECCIE--YRIEDQDLRPAFRSAT*NSTSL 173
           +L ECHHA  K  Y   +   Y    +D RPA    T +  +L
Sbjct: 376 ILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNL 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,018,375
Number of Sequences: 28952
Number of extensions: 341254
Number of successful extensions: 807
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)