Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m10
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      29   3.3  
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 28   7.7  
SB_44565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_25811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 179 NEYNLTGLCSRSSCPLANSKYATIREENGIIYLY 280
           N   +TGLCS  +        A I+++NGIIYL+
Sbjct: 124 NYLAVTGLCSGMAWDKDGDTLAIIQDKNGIIYLW 157


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/31 (54%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 137  CSHKVTTKTQQFCRNEYNLTGLCSRSS-CPL 226
            CS KVT      C N YN T  CS SS CPL
Sbjct: 1515 CS-KVTCHRYAKCNNHYNGTASCSCSSRCPL 1544


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 26/98 (26%), Positives = 41/98 (41%)
 Frame = +2

Query: 326  KVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLIRMRKLKLRRVKELVPIQR 505
            ++KL R F K  +  +E LL   +      K R  K    L+  +K+    +    P+Q+
Sbjct: 761  RMKL-RPFLKDTNTTDETLLQEMSIAMTTEKDRQSK----LVPRQKIAANEINHSPPVQK 815

Query: 506  KIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTYND 619
                        A +AA  +  +E Q LER + G  ND
Sbjct: 816  VKTPGRRGVTIAAELAAMKEQRVENQKLERKRDGRGND 853


>SB_44565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +2

Query: 227 ANSKYATIREENGIIYLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIK 406
           A  + +T+ +E  +I LYM   E + F   Q   V+  +N     HQ  +N +Y  A + 
Sbjct: 450 AYERASTLVKELSLIQLYMAQGE-LCFRKAQ---VQCQKNQTDNCHQQWKNEMYKQAIVH 505

Query: 407 AKCKQRFVKITQYLIRMRKLK 469
            K      + T Y I  + LK
Sbjct: 506 VKMALELAQETNYPIDSQTLK 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,255
Number of Sequences: 59808
Number of extensions: 375011
Number of successful extensions: 1038
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)