Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m10
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.48 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.48 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   4.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.5  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 632 ESCRCHCKCLFLISLTIVFL 573
           E CRCH +C+  ++L ++ L
Sbjct: 477 EPCRCHARCIARLALDMMDL 496


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 632 ESCRCHCKCLFLISLTIVFL 573
           E CRCH +C+  ++L ++ L
Sbjct: 477 EPCRCHARCIARLALDMMDL 496


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 74  FTLIVKMQHDDVVWAIINKTHCSHKVT 154
           + +I+  +HDD    I+N+ H    +T
Sbjct: 467 YVIILDDEHDDAFIGIVNQFHILQFIT 493


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +2

Query: 332 KLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKIT 439
           K    F+KA+  ++EN+  +  ++K    +   K T
Sbjct: 215 KFEEAFQKALRMVDENINGFDPYVKTPNDEELEKPT 250


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 156 VVTLCEQCVLFIMAHTTSSCCILTISVN 73
           VV L  + VLF M   T S C+  + +N
Sbjct: 299 VVPLLGKFVLFTMILDTFSICVTVVVLN 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,945
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)