Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m10
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23280.1 68414.m02912 MAK16 protein-related contains similari...   210   6e-55
At1g13200.1 68414.m01531 F-box family protein contains F-box dom...    29   2.1  
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   2.7  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    27   8.3  

>At1g23280.1 68414.m02912 MAK16 protein-related contains similarity
           to MAK16 protein SP:P10962 from [Saccharomyces
           cerevisiae]
          Length = 303

 Score =  210 bits (513), Expect = 6e-55
 Identities = 97/190 (51%), Positives = 130/190 (68%), Gaps = 1/190 (0%)
 Frame = +2

Query: 92  MQHDDVVWAIINKTHCSHKVTTKTQQFCRNEYNLTGLCSRSSCPLANSKYATIREENGII 271
           MQHD+V+W +I   HCS+    +T  FCRN+YN+TG+C+RSSCPLANS+YATIR+ +G+ 
Sbjct: 1   MQHDEVIWQVIRHKHCSYMAKIETGIFCRNQYNVTGICNRSSCPLANSRYATIRDHDGVF 60

Query: 272 YLYMKTAERIMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQYLI 451
           YLYMKT ER   P K WE+VKL  N+EKA+  I+++LLYWP  ++ K KQR  K+TQ  I
Sbjct: 61  YLYMKTIERAHMPNKLWERVKLPVNYEKALEMIDKHLLYWPKLLQHKVKQRLTKMTQMRI 120

Query: 452 RMRKLKLRRVKELVPIQRKIXXXXXXXXXKALVAARIDNAIEKQLLERLKKGTY-NDIYN 628
           RMRKL L+  + +V   R+          KA+ AA++D AIE +L+ERLKKG Y  +IYN
Sbjct: 121 RMRKLALKTREVVVTTPRRQIKRESRREEKAIKAAQLDKAIETELMERLKKGIYPTEIYN 180

Query: 629 FPQMAFDAAL 658
                F+  L
Sbjct: 181 LSDSVFNKLL 190


>At1g13200.1 68414.m01531 F-box family protein contains F-box domain
           Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
           interaction domain
          Length = 435

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 299 IMFPAKQWEKVKLSRNFEKAIHQINENLLYWPAFIKAKCKQRFVKITQY 445
           ++ PA +W ++     F+  IH+ N     W   +K+     FVK T Y
Sbjct: 167 VVNPATRWLRLLPPAGFQILIHKFNPTEREWNVVMKSIFHLAFVKATDY 215


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 203 CSRSSCPLANSKYATIREENGIIY 274
           C+ S CPL +S YA++   NG++Y
Sbjct: 133 CTHSGCPLTHSSYASL---NGVLY 153


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 641 PFVESCRCHCKCLFLISLTIVFLLHY 564
           PF  SC+  CK  FL+  T+  L+ Y
Sbjct: 505 PFCNSCKVRCKFSFLMKQTLGDLVRY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,237,599
Number of Sequences: 28952
Number of extensions: 260809
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)