Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m08
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   5.4  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   9.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   9.5  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 577 YNFPSMTTTIKSNLSSTSIC 518
           Y +P+M  TIK  L S  +C
Sbjct: 156 YYWPNMYRTIKKRLRSCDLC 175


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 401 TYREKLRAYCHAWNPYDC 454
           T+   +R    AWNP DC
Sbjct: 477 TWMPVMRICVSAWNPKDC 494


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 386 VNQISSFLLLIFYNNDISTLHYSH 315
           V  +++     +YN D+S  HY +
Sbjct: 353 VTNLTNLTYPSYYNQDVSCTHYQN 376


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 427 ICSKFFSISSEARK*IRFH 371
           +C K FS SS   K +R H
Sbjct: 82  LCKKAFSDSSTLTKHLRIH 100


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 427 ICSKFFSISSEARK*IRFH 371
           +C K FS SS   K +R H
Sbjct: 338 LCKKAFSDSSTLTKHLRIH 356


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,945
Number of Sequences: 336
Number of extensions: 4197
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)