Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m08
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    36   0.004
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    33   0.051
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    30   0.27 
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   1.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.4  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   3.4  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    26   5.9  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    26   5.9  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   5.9  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   7.8  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   7.8  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   7.8  

>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 203 FAEIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
           F E+ P+ +   +F YL   D+  C L+ K W R+L D    +W+
Sbjct: 72  FTEVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPG--IWK 114


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
           +P  IL +IF +L  R + +    CK W ++LSD+ +  WR
Sbjct: 34  LPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLS--WR 72


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRY 340
           +P  I++ I L L +    +C LV  TW R+L D +   W++
Sbjct: 242 LPFSIVQSILLNLDIHSFLSCRLVSPTWNRIL-DVHTSYWKH 282


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 158 FYNKMRQIHRYKKYAFAEIIPDHILELI-FLYLRLRDIRNCALVCKTWYRMLSDENNEVW 334
           F  K+  I +   Y+  + IPDHILE+I  LY + R +  C     + Y  + +  +  +
Sbjct: 557 FLEKLPTITKTYVYSNCKEIPDHILEMINALYQQTRALVACTGYLSSDYPKIYEAFSGTF 616

Query: 335 RYHCYRRLTEEMMKSDLLSCLR 400
            Y     + ++ + + L + LR
Sbjct: 617 VYRNLSLIIDKGLANVLQTVLR 638


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = +2

Query: 233 ELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDLLSCLRTYRE 412
           +L+FL  +L    NC L  K    +L+   N +  + C     E+ +    + CL    +
Sbjct: 508 KLLFLVFQLSTNTNCYLDSKNATSLLALYINALKVFPCLMGKLEQRVIDAYVKCLNCSNK 567

Query: 413 KLRAYCH 433
            +   CH
Sbjct: 568 IIHTVCH 574


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 212 IIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDE 319
           I+P  +L  I   L  + I  C  VCK W   +  E
Sbjct: 138 ILPREVLLCILQQLNFKSIVQCMQVCKHWRDCIKKE 173


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 329 VWRYHCYRRLTEEMMKSDLLSCLRTYREKLRAYCHAWNPYDCSR 460
           V+ Y   ++++EEM+   +   L+ + EK +A      PYD  +
Sbjct: 288 VFNYASSKKISEEMISQAIDKNLQEFEEKFQATFPLKAPYDTEK 331


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 377 SDLLSCLRTYREKLRAYCHAWNPYDCSRNIYIKPNGFTLHRNPVAQSTDACRGKV 541
           S LLSC++TYR      C + + YD +  I IK       +  +    DA RG +
Sbjct: 134 SSLLSCMKTYRATALFGC-STDTYDSAGKI-IKIAVHIPTKEEILSGLDAFRGDI 186


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 329 VWR-YHCYRRLTEEMMKSDLLSCL 397
           VW  YHCY +   E ++++L+ CL
Sbjct: 437 VWSFYHCYSKSAIEGLQTNLILCL 460


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 560  DDHDKIQPFLYKHLYSVL 507
            DDH K+Q FL  HL++ L
Sbjct: 1711 DDHLKLQDFLLSHLHNPL 1728


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 119 ITTKIVHLKLNAYFYNKMRQIHRYKKYAFAEII 217
           I TK+V + LN  +Y      H +KK     +I
Sbjct: 112 IWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 541 WILSWSSCLGNYMGRSPWHSS 603
           WI  WS+ +GN +G+   +SS
Sbjct: 149 WITGWSNYIGNIIGQPSVNSS 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,492
Number of Sequences: 5004
Number of extensions: 68095
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)