Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m08
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 1e-21
SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10) 38 0.008
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 36 0.023
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.094
SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11) 33 0.16
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 33 0.22
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08) 32 0.38
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08) 32 0.38
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11) 32 0.38
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 32 0.50
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 32 0.50
SB_28016| Best HMM Match : F-box (HMM E-Value=0.15) 32 0.50
SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05) 31 0.66
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 31 1.2
SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10) 30 1.5
SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09) 30 2.0
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 29 4.7
SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07) 28 6.2
SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_31769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 293
Score = 100 bits (239), Expect = 1e-21
Identities = 48/86 (55%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Frame = +2
Query: 434 AWNPYDCSRNIYIKPNG-FTLHRNPVAQSTDACRGKVGFYRGRHAWEIIWE-GPLGTVAV 607
AWNP D S N+++K + FT HR+PVAQSTD+ R KVGF RG H WEI W GT AV
Sbjct: 61 AWNPADRSVNVFVKDDDPFTFHRHPVAQSTDSIRAKVGFNRGFHVWEIHWSTRQRGTHAV 120
Query: 608 IGVSTRDAPLQCXGYVGLLGSDELSW 685
+GV+T APL C GY L+G+ E W
Sbjct: 121 VGVATAKAPLHCTGYHSLVGNTEDGW 146
>SB_29554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 50.8 bits (116), Expect = 1e-06
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Frame = +2
Query: 437 WNPYDCSRNIYIKPNGFT--LHRNPVAQSTD--ACRGKVGFYRGRHAWEIIWEGPLGTVA 604
W+ S N+Y+ + H +PV +ST A G F G+H WEI GT
Sbjct: 78 WDFQSRSPNVYLCYHNKVACFHIDPVVESTGTAAVLGNKAFAHGQHYWEIKLTDVRGTSM 137
Query: 605 VIGVSTRDAPLQCXG--YVGLLGSDELSW 685
+IGV+T+DA L YV L+G D+ SW
Sbjct: 138 MIGVATQDAMLHTDNYEYVNLVGRDQESW 166
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 140 LKLNAYFYNKMRQIHRYKKYAFAEI-IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSD 316
+KL+ Y+++ + RY+ + +PD I+ IF L +D+ CALVC+ +YR+ D
Sbjct: 2682 IKLDIDSYDRILTLIRYQSEPIPYLCLPDEIVLKIFSSLSHKDLATCALVCQQFYRIAMD 2741
Query: 317 E 319
E
Sbjct: 2742 E 2742
>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
Length = 447
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
+PD +L IFLYL RD+ A VCK W R+ D + +WR
Sbjct: 5 LPDAVLLEIFLYLSRRDLGVVARVCKQWRRIAYDPS--LWR 43
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 36.3 bits (80), Expect = 0.023
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDEN 322
I D ++ +F +L +R++ + +LVC+ WYR+ D +
Sbjct: 564 IADDVIIAVFRFLDMRNLLSASLVCRRWYRLTQDSS 599
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 34.3 bits (75), Expect = 0.094
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRR 355
+P L L+F +L +D+ N A VCK W + +W+ HC R+
Sbjct: 6 LPLDELVLVFDFLHPKDLVNAAQVCKLWREAAG--VSSLWKKHCLRK 50
>SB_9425| Best HMM Match : F-box (HMM E-Value=1.1e-11)
Length = 376
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
IPD +L LI +L +D + ++VC+ W R+ D +WR
Sbjct: 72 IPDTVLLLILSHLNTQDRAHASMVCRRWNRVCRDAT--LWR 110
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 185 RYKKYAFAEIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDE 319
R + F + +PD +L IF +L +++ VC+ W+R DE
Sbjct: 18 RELNHGFWQDLPDSLLLFIFGFLTPKEVLTAGEVCRKWHRASMDE 62
>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
Length = 607
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +2
Query: 215 IPDHILELIFLYL---RLRDIRNCALVCKTWYRMLSDENNEVWRYHCY 349
+P+ +L IF L R+ ++ LVCK+WY + D + +W++ C+
Sbjct: 16 LPETVLLQIFHELANKRIYNLFRLRLVCKSWYELTKD--SSLWKFVCF 61
>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
Length = 473
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDLLSC 394
+PD ++ +F +L + D+ + VC W R+ D + +W+ RR + + L +
Sbjct: 4 LPDVVVLKVFSFLSVADLGQVSRVCYQWQRIAYD--HSLWKAVNLRRFAGSINEEILTAL 61
Query: 395 LRT 403
+RT
Sbjct: 62 IRT 64
>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
Length = 130
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 209 EIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
E +PD +L +F +L R + ALVCK W + D +WR
Sbjct: 27 ERLPDSVLLQVFSFLCQRSLCKLALVCKRWRDIAFD--GSLWR 67
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 221 DHILELIFLYLRLRDIRNCALVCKTWYRMLSD 316
DHI E I +L + + +VCK W+R+++D
Sbjct: 79 DHIAENILSFLDAKSLCAAEVVCKEWHRVIAD 110
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSD----ENNEVWRYHCYRRLTEEMMKSD 382
+P ++ IF +L L DI++ A VC W + D +N Y + + ++ S
Sbjct: 19 LPQEVVSYIFSFLPLADIKSSARVCHLWAKASDDPLLWKNTTATLYTKSKTFPDSLIYSL 78
Query: 383 LLSCLRTYR 409
C+++ R
Sbjct: 79 QCRCIKSIR 87
>SB_28016| Best HMM Match : F-box (HMM E-Value=0.15)
Length = 397
Score = 31.9 bits (69), Expect = 0.50
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Frame = +2
Query: 218 PDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRRLTEEM---MKSDLL 388
P + ++I Y++ D+R +L+C+ +++ N + Y+ E++ ++ D +
Sbjct: 159 PLDLWDMIAKYIQPEDVRTFSLICRGTQMVINSSNFWLSFYNRLIPDPEKLPLELRPDRI 218
Query: 389 SCLRTYREK-LRAYCHAWNPYDCSRNIYIKPNGFTLHRNP 505
C R + +RA H ++P ++ I+PN T H P
Sbjct: 219 KCRPGLRPRVIRALFHCYDPL----SVRIQPNSDTGHNPP 254
>SB_51704| Best HMM Match : F-box (HMM E-Value=3.3e-05)
Length = 337
Score = 31.5 bits (68), Expect = 0.66
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 215 IPDHILELIFLY--LRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRR 355
+ D ++++I Y L RDI A VC + + + +NEVWR C RR
Sbjct: 15 LADELVDMILAYDLLDHRDICRFAQVCSRFNAIAT--SNEVWRRRCVRR 61
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 218 PDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
PD+++ IF YL ++ + + VC+ WY + D + +W+
Sbjct: 30 PDNVMLNIFRYLDIKALCAASKVCRRWYHLGKDRS--LWK 67
>SB_47131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 329 VWRYHCYRRLTEEMMKSDLLSCLRTYREKLRAYCHAWNPYDCSRNIYI 472
VWR Y+ L EE+ + Y+ +L+AY H NP++ ++++
Sbjct: 588 VWRICDYKDLYEEIYSPSFYTSKYGYKVQLKAYLHT-NPFNGETHLWL 634
>SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)
Length = 216
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/69 (23%), Positives = 36/69 (52%)
Frame = +2
Query: 209 EIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDLL 388
EI+ +L IF +L + + +C+ VCK WY + + +W+ +++ + ++ L
Sbjct: 2 EILGTDVLLHIFSHLDAQSLCSCSQVCKQWYEV--STISSLWKMLVFQQCRKRNIRPH-L 58
Query: 389 SCLRTYREK 415
T++E+
Sbjct: 59 GRAETWKER 67
>SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09)
Length = 425
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSD 316
+ + +L +F YLRL ++ + VCK W R+ D
Sbjct: 34 LDEAVLLKVFSYLRLGELLQVSRVCKQWNRVARD 67
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 239 IFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
IF YL D+ A VCK W+ + D + +WR
Sbjct: 57 IFSYLSRADLLKAAEVCKRWHELSFDRS--LWR 87
>SB_4545| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 137 HLKLNAYFYNKMRQIHRYKKYAFAEIIPDHILELIFLYLRLRD 265
HLKL +Y Y+ ++R++ + ++ + IF YL L +
Sbjct: 96 HLKLGSYSYSTKNIVYRWQSPLGVTVRNKNLAQFIFTYLELSE 138
>SB_49097| Best HMM Match : F-box (HMM E-Value=1.6e-07)
Length = 190
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 227 ILELIFLYLRLRDIRNCALVCKTW 298
IL LIF YL +RD A VC W
Sbjct: 16 ILALIFAYLSVRDKGRVAQVCTKW 39
>SB_17611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 209 EIIPDHILELIFLYLRLRDIRNCALVCKTWYRML 310
+++PD +L IF +L RD+ + +C+ + R+L
Sbjct: 2 DLLPDELLVNIFRHLPARDLIALSFLCRRFRRLL 35
>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 215 IPDHILELIFLYLR-LRDIRNCALVCKTWYRMLS 313
+P ++E I ++L D+ LVC+ W R++S
Sbjct: 20 LPAELIEKILMFLSSYGDLEQARLVCRVWNRLVS 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,171,148
Number of Sequences: 59808
Number of extensions: 469983
Number of successful extensions: 1131
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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