Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11m08
(687 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24) con... 37 0.011
At3g26810.1 68416.m03354 transport inhibitor response protein, p... 37 0.014
At5g49980.1 68418.m06189 transport inhibitor response protein, p... 36 0.019
At1g12820.1 68414.m01489 transport inhibitor response protein, p... 36 0.033
At5g42360.1 68418.m05158 kelch repeat-containing F-box family pr... 35 0.044
At5g42350.1 68418.m05157 kelch repeat-containing F-box family pr... 35 0.044
At4g24390.2 68417.m03498 F-box family protein (FBX14) similar to... 35 0.044
At4g24390.1 68417.m03497 F-box family protein (FBX14) similar to... 35 0.044
At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1) (... 35 0.044
At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1... 34 0.10
At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2) iden... 33 0.23
At5g14160.1 68418.m01656 F-box family protein contains F-box dom... 33 0.23
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s... 32 0.41
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 31 0.54
At5g49610.1 68418.m06139 F-box family protein contains Pfam PF00... 31 0.72
At1g78240.1 68414.m09118 dehydration-responsive protein-related ... 31 0.95
At5g55150.1 68418.m06876 F-box family protein similar to unknown... 30 1.3
At2g05970.1 68415.m00648 F-box family protein contains F-box dom... 30 1.7
At1g78280.1 68414.m09122 transcription factor jumonji (jmjC) dom... 30 1.7
At4g09700.1 68417.m01594 hypothetical protein similar to zinc fi... 29 2.2
At2g39940.1 68415.m04908 coronatine-insensitive 1 / COI1 (FBL2) ... 29 2.2
At5g15240.1 68418.m01785 amino acid transporter family protein l... 29 2.9
At5g12100.1 68418.m01421 pentatricopeptide (PPR) repeat-containi... 29 2.9
At5g07670.1 68418.m00878 F-box family protein similar to unknown... 29 2.9
At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s... 29 2.9
At4g03190.1 68417.m00436 F-box family protein (FBL18) almost ide... 29 2.9
At3g56470.1 68416.m06280 F-box family protein similar to F-box p... 29 2.9
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 29 2.9
At3g16210.1 68416.m02046 F-box family protein contains F-box dom... 29 2.9
At5g45360.1 68418.m05569 F-box family protein similar to SKP1 i... 29 3.8
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 28 5.0
At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00... 28 6.7
At4g05490.1 68417.m00830 F-box family protein (FBL22) contains s... 28 6.7
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 28 6.7
At1g76920.1 68414.m08954 F-box family protein (FBX3) contains si... 28 6.7
At1g06120.1 68414.m00641 fatty acid desaturase family protein si... 28 6.7
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta... 27 8.8
At2g01260.2 68415.m00039 expressed protein 27 8.8
At2g01260.1 68415.m00038 expressed protein 27 8.8
At1g55270.1 68414.m06314 kelch repeat-containing F-box family pr... 27 8.8
At1g54500.1 68414.m06216 rubredoxin family protein similar to SP... 27 8.8
>At4g07400.1 68417.m01135 F-box family protein (FBL8) (FBL24)
contains similarity to SKP1 interacting partner 2
GI:10716949 from [Arabidopsis thaliana]; contains Pfam
PF00646: F-box domain
Length = 554
Score = 37.1 bits (82), Expect = 0.011
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 197 YAFAEIIPDHILELIFLYLRLRDIRNCALVCKTW 298
Y + +PD L LIF L D++ C+LVC+ W
Sbjct: 71 YDYISNLPDECLSLIFQSLTCADLKRCSLVCRRW 104
>At3g26810.1 68416.m03354 transport inhibitor response protein,
putative E3 ubiquitin ligase SCF complex F-box subunit;
similar to transport inhibitor response 1 GI:2352492
from [Arabidopsis thaliana]
Length = 575
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 218 PDHILELIFLYLRLRDIRNC-ALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDLLSC 394
PD ++E +F ++ RN +LVCK+WY++ +V+ +CY E +++ C
Sbjct: 5 PDEVIEHVFDFVTSHKDRNAISLVCKSWYKIERYSRQKVFIGNCYAINPERLLRR--FPC 62
Query: 395 LRT 403
L++
Sbjct: 63 LKS 65
>At5g49980.1 68418.m06189 transport inhibitor response protein,
putative E3 ubiquitin ligase SCF complex F-box subunit;
similar to F-box containing protein TIR1 GI:13249030
from [Populus tremula x Populus tremuloides]
Length = 619
Score = 36.3 bits (80), Expect = 0.019
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +2
Query: 203 FAEIIPDHILELIFLYLRLRDIRNCA-LVCKTWYRMLSDENNEVWRYHCY 349
F + + +++LE + +L R RN A LVCK+W+R+ + +EV+ +CY
Sbjct: 50 FPDHVLENVLENVLQFLDSRCDRNAASLVCKSWWRVEALTRSEVFIGNCY 99
>At1g12820.1 68414.m01489 transport inhibitor response protein,
putative E3 ubiquitin ligase SCF complex F-box subunit;
similar to transport inhibitor response 1 GI:2352492
from [Arabidopsis thaliana]
Length = 577
Score = 35.5 bits (78), Expect = 0.033
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 218 PDHILELIFLYLRLRDIRNC-ALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDLLSC 394
PD ++E +F ++ RN +LVCK+W+++ EV+ +CY E +++ C
Sbjct: 5 PDEVIEHVFDFVASHKDRNSISLVCKSWHKIERFSRKEVFIGNCYAINPERLIRR--FPC 62
Query: 395 LRT 403
L++
Sbjct: 63 LKS 65
>At5g42360.1 68418.m05158 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 563
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 188 YKKYAFAEIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDE 319
Y+K+ + +PD ILE+ + L L + N LVCK W M + +
Sbjct: 129 YRKHVY---LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQ 169
>At5g42350.1 68418.m05157 kelch repeat-containing F-box family
protein contains Pfam profiles PF01344: Kelch motif,
PF00646: F-box domain
Length = 563
Score = 35.1 bits (77), Expect = 0.044
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 188 YKKYAFAEIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDE 319
Y+K+ + +PD ILE+ + L L + N LVCK W M + +
Sbjct: 129 YRKHVY---LPDDILEMCLMRLPLTSLLNAHLVCKKWQSMANTQ 169
>At4g24390.2 68417.m03498 F-box family protein (FBX14) similar to
transport inhibitor response 1 protein GI:8777429 from
[Arabidopsis thaliana]
Length = 623
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 218 PDHILELIF----LYLRLRDIRNC-ALVCKTWYRMLSDENNEVWRYHCY 349
PDH+LE + +L R RN +LVC++WYR+ + EV+ +CY
Sbjct: 51 PDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCY 99
>At4g24390.1 68417.m03497 F-box family protein (FBX14) similar to
transport inhibitor response 1 protein GI:8777429 from
[Arabidopsis thaliana]
Length = 623
Score = 35.1 bits (77), Expect = 0.044
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Frame = +2
Query: 218 PDHILELIF----LYLRLRDIRNC-ALVCKTWYRMLSDENNEVWRYHCY 349
PDH+LE + +L R RN +LVC++WYR+ + EV+ +CY
Sbjct: 51 PDHVLENVLENVLQFLTSRCDRNAVSLVCRSWYRVEAQTRLEVFIGNCY 99
>At3g62980.1 68416.m07075 transport inhibitor response 1 (TIR1)
(FBL1) E3 ubiquitin ligase SCF complex F-box subunit;
identical to transport inhibitor response 1 GI:2352492
from [Arabidopsis thaliana]
Length = 594
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +2
Query: 218 PDHILELIFLYLRL-RDIRNCALVCKTWYRMLSDENNEVWRYHCY 349
P+ +LE +F +++L +D + +LVCK+WY + +V+ +CY
Sbjct: 10 PEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCY 54
>At1g47056.1 68414.m05221 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 518
Score = 33.9 bits (74), Expect = 0.10
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 203 FAEIIPDHILELIFLYLRLRDIRNCALVCKTW 298
+ +PD L L+F +L + + CALVC+ W
Sbjct: 39 YTSSLPDECLALVFQFLNSGNRKRCALVCRRW 70
>At5g67250.1 68418.m08477 SKP1 interacting partner 2 (SKIP2)
identical to SKP1 interacting partner 2 GI:10716949 from
[Arabidopsis thaliana]
Length = 527
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 203 FAEIIPDHILELIFLYLRLRDIRNCALVCKTW 298
F +PD L +F +L D + C+LVCK W
Sbjct: 42 FTGDLPDECLAHVFQFLGAGDRKRCSLVCKRW 73
>At5g14160.1 68418.m01656 F-box family protein contains F-box domain
Pfam:PF00646
Length = 352
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSD 316
+P+ ++ L+ LRL D VC TW R+ D
Sbjct: 20 LPEDVIRLVLRRLRLSDFHRARAVCSTWCRVWGD 53
>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
similarity to SKP1 interacting partner 2 GI:10716949
from [Arabidopsis thaliana]; contains Pfam profile:
PF00646 F-box domain
Length = 522
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 197 YAFAEIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENN 325
Y F +PD L IF +L D + C+LV K W +L D N
Sbjct: 38 YDFTANLPDDCLAHIFQFLSAGDRKRCSLVSKRW--LLVDGQN 78
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 185 RYKKYAFAEIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLS 313
+ + ++ ++PD +LE I +L + I VCK W ++S
Sbjct: 33 KVETFSMDSLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVS 75
>At5g49610.1 68418.m06139 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain; similar to unknown protein
(gb|AAF30317.1)
Length = 359
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 212 IIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDE 319
+ PD ++ I L ++ + VCK+WYR+ SD+
Sbjct: 8 LFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDK 43
>At1g78240.1 68414.m09118 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 684
Score = 30.7 bits (66), Expect = 0.95
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 224 HILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDL 385
H L L+FL + L I AL W+ + ++ YH YRRL E+++ SDL
Sbjct: 78 HRLMLLFLKISLVLIVVIALAGSFWWTISISTSSRGHVYHNYRRLQEQLV-SDL 130
>At5g55150.1 68418.m06876 F-box family protein similar to unknown
protein (dbj|BAA95762.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 360
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 200 AFAEIIPDHILELIFLYLR-LRDIRNCALVCKTW 298
+++E +P+ +L +F L RDI NCA VC +W
Sbjct: 7 SWSEFLPE-LLNTVFHNLNDARDILNCATVCSSW 39
>At2g05970.1 68415.m00648 F-box family protein contains F-box domain
Pfam:PF00646
Length = 377
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 179 IHRYKKYAFAEIIPDHILELIFLYLRLRDIRNCALVCKTWY 301
I KK +++E+ PD +L +F L D+ VC +W+
Sbjct: 2 IETNKKASWSELCPD-VLRCVFELLSFSDLNRTRSVCSSWH 41
>At1g78280.1 68414.m09122 transcription factor jumonji (jmjC)
domain-containing protein contains Pfam PF00646: F-box
domain; contains Pfam PF02373: jmjC domain; similar to
apoptotic cell clearance receptor PtdSerR (GI:11037740)
[Mus musculus]
Length = 916
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 212 IIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRR 355
++PD + ++ YL RDI + A V Y + ++E +W C RR
Sbjct: 19 VLPDETICVLLEYLAPRDIAHLACVSSVMYILCNEE--PLWMSLCLRR 64
>At4g09700.1 68417.m01594 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 371
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 341 HCYRRLTEEMMKSDLLSCLRTYREKLRAYCHAWNPYDCSRNIYIKPNGFTLHRNPVAQST 520
H R ++ KSD S Y + R ++P DCSR Y +P + R+ V
Sbjct: 273 HFNSRRSDHREKSDYPSA---YSHRHREPRRDFSPQDCSRRDYSRPASYNFRRDSVRSGF 329
Query: 521 D 523
D
Sbjct: 330 D 330
>At2g39940.1 68415.m04908 coronatine-insensitive 1 / COI1 (FBL2) E3
ubiquitin ligase SCF complex F-box subunit; identical to
LRR-containing F-box protein GI:3158394 from
[Arabidopsis thaliana]
Length = 592
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 221 DHILELIFLYLR-LRDIRNCALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMK 376
D ++E + Y+ +D + +LVC+ W+++ S+ V CY + + +
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSR 70
>At5g15240.1 68418.m01785 amino acid transporter family protein low
similarity to amino acid transporter system A3 [Homo
sapiens] GI:13876616; belongs to INTERPRO:IPR002422
amino acid/polyamine transporter, family II
Length = 423
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Frame = -1
Query: 330 TSLFSSLSIL-YQVLHTNAQFRISLNLRYKKISSK--IWSGMISAKAYF 193
T +++S+++L Y + ++ + +I+LNL K+SSK IW+ +++ A F
Sbjct: 261 TFIYASVAVLGYLMYGSDVESQITLNLPTDKLSSKVAIWTTLVNPIAKF 309
>At5g12100.1 68418.m01421 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 816
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 299 YRMLSDENNEVWRYHCYRRLTEEMMKSDLLSCLRTYREKLRAYCHAWNP 445
Y +L D + R + +L +EM+ LL L TY + YC A NP
Sbjct: 217 YNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNP 265
>At5g07670.1 68418.m00878 F-box family protein similar to unknown
protein (pir||C71419) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 476
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 203 FAEIIPDHILELIFLYLRLRDIRNCALVCKTWYRM 307
F ++PD IL + + +N +LVCK W+R+
Sbjct: 61 FTLLLPDLILIRVIQKIPNSQRKNLSLVCKRWFRL 95
>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
similarity to F-box protein FBL2 GI:6063090 from [Homo
sapiens]
Length = 942
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
+ D +L ++F +L D+ A+VC+ W ++ + + WR
Sbjct: 193 LTDDLLHMVFSFLNHVDLCRSAMVCRQW--RVASAHEDFWR 231
>At4g03190.1 68417.m00436 F-box family protein (FBL18) almost
identical to GRR1-like protein 1 GI:12658970 from
[Arabidopsis thaliana]; similar to leucine-rich repeats
containing F-box protein FBL3 (GI:5919219) [Homo
sapiens]; similar to F-box protein FBL2 (GI:6063090)
[Homo sapiens]
Length = 585
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 218 PDHILELIFLYLRLRDIRNC-ALVCKTWYRMLSDENNEVWRYHCY 349
P +LE I ++ + RN +LVCK+W+ V+ +CY
Sbjct: 6 PPKVLEHILSFIDSNEDRNSVSLVCKSWFETERKTRKRVFVGNCY 50
>At3g56470.1 68416.m06280 F-box family protein similar to F-box
protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]
Length = 367
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 191 KKYAFAEIIPDHILELIFLYLRLRDIRNCALVCKTWY 301
+KY +P +L+L+ L L+D + VCKTW+
Sbjct: 24 EKYQTFINLPCDLLQLVISRLPLKDNIRASAVCKTWH 60
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
protein
Length = 454
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 209 EIIPDHILELIFLYLRLRDIRNCALVCKTW 298
E + IL +IF +L L D+ +C +VC +W
Sbjct: 24 ESLDADILCIIFSFLDLFDLVHCTVVCNSW 53
>At3g16210.1 68416.m02046 F-box family protein contains F-box domain
Pfam:PF00646
Length = 360
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +2
Query: 206 AEIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSD 316
++ +P+ + I + L ++D+ VCKTW +++D
Sbjct: 2 SKFLPEELAIEILVRLSMKDLARFRCVCKTWRDLIND 38
>At5g45360.1 68418.m05569 F-box family protein similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 316
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVW-RYHCYR 352
+P + I +L D+ +C+LVCK +DE+ +W R +C R
Sbjct: 74 VPTELFRHILKFLSSEDLVSCSLVCKFLNFAAADES--LWRRLYCIR 118
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 457 EKHLYQTKWIYFTQKSCSTEYR-CL 528
EK L TKW Y K C+T +R CL
Sbjct: 547 EKKLDTTKWFYTCNKCCTTVHRECL 571
>At5g39450.1 68418.m04778 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 579
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHC 346
+P+ ++ +I ++ RDI N +L CK+ ++ E +W C
Sbjct: 22 LPEDVIAVIARFVSPRDICNLSLCCKSLCDVVDSE--RIWLVQC 63
>At4g05490.1 68417.m00830 F-box family protein (FBL22) contains
similarity to N7 protein GI:3273101 from [Medicago
truncatula]
Length = 307
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 203 FAEIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWR 337
+AE+ PD + ++ L + N VC++W R+ D +WR
Sbjct: 27 WAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDP--LIWR 69
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 457 EKHLYQTKWIYFTQKSCST-EYRCL 528
EK L T+W Y ++SC+T ++CL
Sbjct: 513 EKGLDPTEWFYINKESCTTIHHKCL 537
>At1g76920.1 68414.m08954 F-box family protein (FBX3) contains
similarity to stamina pistilloidia GI:4101570, the pea
ortholog of Fim and UFO from [Pisum sativum]
Length = 374
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDE 319
+P L IF L +RDI C VCK + ++L+ +
Sbjct: 9 LPPDSLHQIFSSLPIRDIMICRSVCKFFNQLLTSQ 43
>At1g06120.1 68414.m00641 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase GB:BAA25180
GI:2970034 (ADS1) from [Arabidopsis thaliana]; supported
by cDNA:gi_12083275_gb_AF332434.1_AF332434
Length = 299
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +2
Query: 434 AWNPYDCSRNI-YIKP--NGFTLHRNPVAQSTDACRGKVGFYRGRHAWEIIW 580
AWN D SRNI ++ P G + H N A A G + +Y+ W +IW
Sbjct: 223 AWNTKDTSRNIWWLGPFTMGESWHNNHHAFEASARHG-LEWYQVDLTWYLIW 273
>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
metalloproteinase [Arabidopsis thaliana] GI:3128477;
contains InterPro accession IPR001818: Matrixin
Length = 364
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 536 KVGFYRGRHAWEIIWEGPLGTVA 604
K+GFY G H + ++G LGT+A
Sbjct: 213 KIGFYAGDHGDGLPFDGVLGTLA 235
>At2g01260.2 68415.m00039 expressed protein
Length = 324
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 209 EIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDLL 388
E D +L+L + L +R+C L+ +W+ + W Y YR T +K DL
Sbjct: 231 EPFADKVLDLAAQFPELMTLRSCDLLRSSWFSV-------AW-YPIYRIPTGPTLK-DLD 281
Query: 389 SCLRTY 406
+C TY
Sbjct: 282 ACFLTY 287
>At2g01260.1 68415.m00038 expressed protein
Length = 369
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 209 EIIPDHILELIFLYLRLRDIRNCALVCKTWYRMLSDENNEVWRYHCYRRLTEEMMKSDLL 388
E D +L+L + L +R+C L+ +W+ + W Y YR T +K DL
Sbjct: 231 EPFADKVLDLAAQFPELMTLRSCDLLRSSWFSV-------AW-YPIYRIPTGPTLK-DLD 281
Query: 389 SCLRTY 406
+C TY
Sbjct: 282 ACFLTY 287
>At1g55270.1 68414.m06314 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 4
[Arabidopsis thaliana] GI:10716953; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 434
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 215 IPDHILELIFLYLRLRDIRNCALVCKTWYRMLS 313
+PD + + + + R LVCK WYR+ S
Sbjct: 82 LPDDLAVACLIRVPRAEHRKLRLVCKRWYRLAS 114
>At1g54500.1 68414.m06216 rubredoxin family protein similar to
SP|P00270 Rubredoxin (Rd) {Desulfovibrio gigas};
contains Pfam profile PF00301: Rubredoxin
Length = 195
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 329 LHYSHH*AFYTKSYIPTHSFEYLSI 255
LH+ HH F T SY P+H YL++
Sbjct: 33 LHHLHHHIFITISY-PSHHSRYLAV 56
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,052,130
Number of Sequences: 28952
Number of extensions: 331091
Number of successful extensions: 889
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -