Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m06
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   4.1  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   5.4  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   5.4  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 577 KFWIKHAHCCRSH 615
           +F ++H HCCR H
Sbjct: 64  RFIVRHIHCCRCH 76


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +1

Query: 283 ATNARNNKLKEQAWQTLVNDFNSSIRRFPRTPSQLRLKWENLKN 414
           ++N ++++   Q +   V+  ++ +  FPRT     ++W++LK+
Sbjct: 158 SSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKD 201


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 537 HNYFKYYGNLKKKSCL 490
           H YF YYG    +SC+
Sbjct: 144 HGYFNYYGASSSRSCI 159


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 199  SRKAAPMTKDETMILAELVAAKKHFNNKATNARN 300
            S +   +TKD    +A L+   KH NN+ ++ RN
Sbjct: 999  SLRCENITKDSETRVALLLEENKHLNNELSSHRN 1032


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,494,434
Number of Sequences: 5004
Number of extensions: 47565
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)