Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m06
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0444 + 17816207-17817436                                         35   0.064
07_03_0999 - 23216665-23217419,23217626-23217956                       35   0.064
06_03_0334 - 19660526-19661755                                         35   0.064
03_01_0487 - 3704763-3705416                                           34   0.11 
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    30   1.8  
09_04_0176 + 15361766-15362836                                         29   2.4  
03_05_0969 + 29283905-29284570,29284862-29284930,29286533-292866...    29   4.2  
12_01_0898 - 8685389-8685587,8685784-8685858,8687589-8687760,868...    28   7.4  

>11_04_0444 + 17816207-17817436
          Length = 409

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 298 NNKLKEQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 411
           N+K  EQ W+ +  +FNS++      R P Q R  W+N+K
Sbjct: 186 NDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 225


>07_03_0999 - 23216665-23217419,23217626-23217956
          Length = 361

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 298 NNKLKEQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 411
           N+K  EQ W+ +  +FNS++      R P Q R  W+N+K
Sbjct: 117 NDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 156


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 34.7 bits (76), Expect = 0.064
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 298 NNKLKEQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 411
           N+K  EQ W+ +  +FNS++      R P Q R  W+N+K
Sbjct: 186 NDKKSEQYWKAVAREFNSNMPSNGNKRNPKQCRTHWDNVK 225


>03_01_0487 - 3704763-3705416
          Length = 217

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 298 NNKLKEQAWQTLVNDFNSSIRR--FPRTPSQLRLKWENLKNATA 423
           N+K  E  W+ + ++FNS++ R    RT  Q++  W+N+K   A
Sbjct: 117 NDKKSEYYWKDVADEFNSNMPRNAHTRTVKQMKTHWDNVKRDIA 160


>12_01_0906 +
           8799284-8799441,8800865-8801690,8801933-8802055,
           8802144-8802210,8802611-8802714,8802798-8802900,
           8803103-8803401,8804009-8804263,8805471-8805776,
           8805866-8806194,8806829-8806916,8807027-8807164,
           8807438-8807458
          Length = 938

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 594 MLYPKFHLQSLPPPACNKEHNYFKYYGNLKKKSCL 490
           M  PK  L  +    C++E  Y +YYG L ++ C+
Sbjct: 641 MQQPKMELCIMLLECCSQERTYLRYYGLLGQRFCM 675


>09_04_0176 + 15361766-15362836
          Length = 356

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 298 NNKLKEQAWQTLVNDFNSSI--RRFPRTPSQLRLKWENLK 411
           N+K  E  W+ +  +FN+++      RT  Q R  W+N+K
Sbjct: 189 NDKKSEHYWKAVAAEFNTNMPSNGNKRTAKQCRTHWDNVK 228


>03_05_0969 +
           29283905-29284570,29284862-29284930,29286533-29286631,
           29287016-29287324
          Length = 380

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   CLSTILDDDLPPKRFKTFVYNSKCV 78
           C+ T++DD+ PP  F  F  N K V
Sbjct: 189 CIKTLIDDESPPVSFAKFSPNGKFV 213


>12_01_0898 -
           8685389-8685587,8685784-8685858,8687589-8687760,
           8687854-8687974
          Length = 188

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 120 VSMNYIDNNNFTLKTLSSSLENISFSVK 203
           V M+ +DNNNF+  ++ SS  NI+  +K
Sbjct: 95  VDMSQLDNNNFSGTSIPSSYGNITIVLK 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,297
Number of Sequences: 37544
Number of extensions: 272135
Number of successful extensions: 675
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)