Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m06
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38250.1 68415.m04697 DNA-binding protein-related contains si...    33   0.12 
At5g17720.1 68418.m02077 hydrolase, alpha/beta fold family prote...    29   3.5  
At5g65020.1 68418.m08179 annexin 2 (ANN2) identical to annexin (...    28   6.1  
At1g27000.1 68414.m03292 bZIP family transcription factor              28   6.1  
At1g55210.1 68414.m06306 disease resistance response  protein-re...    27   8.1  
At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7) c...    27   8.1  

>At2g38250.1 68415.m04697 DNA-binding protein-related contains
           similarity to DNA-binding protein GI:170271 from
           [Nicotiana tabacum]
          Length = 289

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 247 ELVAAKKHFNNKATNARNNKLKEQAWQTLVNDFNSSIRRFPRTPSQLRLKWENL 408
           EL+  +   +      + NKL    W+ + N      + FPR+P Q + KW+NL
Sbjct: 49  ELIGIRGELDQTFMETKRNKL---LWEVISNKMRD--KSFPRSPEQCKCKWKNL 97


>At5g17720.1 68418.m02077 hydrolase, alpha/beta fold family protein
           low similarity to SP|P27747 Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}, SP|P24640 Lipase 3 precursor (EC 3.1.1.3)
           (Triacylglycerol lipase) {Moraxella sp}; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 443

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 560 HLQPVTKSIII-SNTTAT*RKNHVYQCVIRDKQSTNYTNLTKVVSYVAVAFFKFSHFSRS 384
           H++ + KS+I+ +N T+     H   C+I    +  +++  K V+ VA  +F  S    S
Sbjct: 219 HVEMIEKSVILPNNLTSFHVVAHSMGCIIGIALAAKFSDSVKSVALVAPPYFADSKGGAS 278

Query: 383 C 381
           C
Sbjct: 279 C 279


>At5g65020.1 68418.m08179 annexin 2 (ANN2) identical to annexin
           (AnnAt2) [Arabidopsis thaliana] GI:4959108
          Length = 317

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 244 AELVAAKKHFNNKATNARNNKLKEQA 321
           A+L A   H+NN+  NA N  LKE++
Sbjct: 199 AQLGATLNHYNNEYGNAINKNLKEES 224


>At1g27000.1 68414.m03292 bZIP family transcription factor
          Length = 304

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +1

Query: 211 APMTKDETMILAELVAAKKHFNNKATNARNNKLKEQAWQTLVNDFNSSIRRFPRTPSQLR 390
           A +TK+   +   L AAK+H   +  N  ++K+++Q    L  + NS +       S L 
Sbjct: 134 ANLTKNLEQVSETLAAAKRHLTQRIQNL-DDKVEKQI--DLSKEINSQVISARENISSLE 190

Query: 391 LKWENLKN 414
           +  E+L N
Sbjct: 191 MDLESLHN 198


>At1g55210.1 68414.m06306 disease resistance response
           protein-related/ dirigent  protein-related smimilar to
           dirigent protein [Thuja plicata] gi|6694699|gb|AAF25360;
           similar to pathogenesis-related protein [Pisum sativum]
           gi|4585273|gb|AAD25355
          Length = 187

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 295 RNNKLKEQAWQTLVNDFNSSIRRFPRTPSQLRLKWENLKNATA 423
           RN  L E     +V    S + RF R   + R KW NLKN  A
Sbjct: 136 RNTALSEVREMPIVG--GSGLFRFARGYVEARTKWINLKNGDA 176


>At1g17770.1 68414.m02199 SET domain-containing protein (SUVH7)
           contains Pfam profiles: PF05033: Pre-SET motif, PF00856
           SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754
          Length = 693

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 644 LGCKSVKNIICDLQQCACFIQNFICNPYH 558
           LGC++ ++  C  Q C C  +N    PYH
Sbjct: 456 LGCQNCRHQPCMHQNCTCVQRNGDLLPYH 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,874
Number of Sequences: 28952
Number of extensions: 238887
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)