Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m04
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    28   1.6  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    27   2.8  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    26   4.8  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.4  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    26   6.4  

>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 537 EQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQ 406
           E V  AK++ +S  HPD+ E   +  RMS  +    ++T  MLQ
Sbjct: 62  ETVWHAKKIVDSTLHPDTKEPVFLPFRMSCFVLTNLVVTAGMLQ 105


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 524 LITCSNFVPGCSRPALNIELEKYDQICKINIAFVCIIYTSTF 649
           ++ C++   G S   L    E+ D+I  +N+A+    Y + F
Sbjct: 81  IVFCNSATDGISTVLLTFPWEQNDEILMLNVAYPTCTYAADF 122


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 184 LSSVIPVVKITIFTSNLWWKHAIKYPDSL 98
           +  VIPV KI     NLW+   I + D L
Sbjct: 124 IDQVIPVQKILNAGQNLWFNEIILFEDEL 152


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 286  FSDVTIK*ISKFYPCVPLKSMLCF 215
            FS +T++ + +FY  VPL  + CF
Sbjct: 1033 FSKLTLQQVQEFYEVVPLAFINCF 1056


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 152 RYFNNRNNRTQIEQAYLLGTFKTQHGLQRNTRIKLTYLFNGD 277
           R + N  N+ +  + YL+   K +  + +   IKL +L   D
Sbjct: 808 RVYRNMFNQNKFVELYLMDDMKREFNVNQMDLIKLAHLLGSD 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,955
Number of Sequences: 5004
Number of extensions: 63535
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)