Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11m04
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)               81   1e-15
SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   1e-15
SB_13924| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   2e-11
SB_940| Best HMM Match : No HMM Matches (HMM E-Value=.)                62   6e-10
SB_45275| Best HMM Match : DUF1473 (HMM E-Value=2.5)                   28   6.8  
SB_40366| Best HMM Match : DUF1473 (HMM E-Value=2.5)                   28   6.8  
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.0  

>SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)
          Length = 217

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 34/59 (57%), Positives = 43/59 (72%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           +R G E  G  +E +  AK L +SAFHPD+G+  N+ GRM+FQ+PGG  ITGAMLQWYR
Sbjct: 50  YRRGEEPAGVSVEDLWNAKHLTDSAFHPDTGDRMNLIGRMTFQVPGGMAITGAMLQWYR 108


>SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 34/59 (57%), Positives = 43/59 (72%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           +R G E  G  +E +  AK L +SAFHPD+G+  N+ GRM+FQ+PGG  ITGAMLQWYR
Sbjct: 310 YRRGEEPAGVSVEDLWNAKHLTDSAFHPDTGDRMNLIGRMTFQVPGGMAITGAMLQWYR 368


>SB_13924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 31/59 (52%), Positives = 39/59 (66%)
 Frame = -3

Query: 573 FRAGREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWYR 397
           +R G E  GT  EQV  AK+ YESA+HPD+GE   + GRMS Q+P    ITG M+ +YR
Sbjct: 56  YRRGEEPKGTSDEQVWWAKKTYESAYHPDTGETMFILGRMSAQVPMNMTITGCMMTFYR 114


>SB_940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 29/55 (52%), Positives = 36/55 (65%)
 Frame = -3

Query: 564 GREQPGTKLEQVIKAKQLYESAFHPDSGELQNVFGRMSFQMPGGCLITGAMLQWY 400
           G E  GT  EQV  AK+ YESA+HPD+GE   + GRMS Q+P    ITG M+ +Y
Sbjct: 3   GEEPKGTSDEQVWWAKKTYESAYHPDTGETMFILGRMSAQVPMNMTITGCMMTFY 57


>SB_45275| Best HMM Match : DUF1473 (HMM E-Value=2.5)
          Length = 275

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 191 QAYLLGTFKTQHGLQRNTRIKLTYLFNGDI*KLLRYCFS 307
           Q++LLG       L+R+ RIK+ +  N  + K+ ++ FS
Sbjct: 21  QSFLLGAMDNMTLLERDERIKVAHTLNVPLQKIPQFSFS 59


>SB_40366| Best HMM Match : DUF1473 (HMM E-Value=2.5)
          Length = 489

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 191 QAYLLGTFKTQHGLQRNTRIKLTYLFNGDI*KLLRYCFS 307
           Q++LLG       L+R+ RIK+ +  N  + K+ ++ FS
Sbjct: 235 QSFLLGAMDNMTLLERDERIKVAHTLNVPLQKIPQFSFS 273


>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 408 QWYR*AFDIVKSPELSWYRKFLRSS*NIYVFV*ILKQYL 292
           +W R  F+IV++PE+S   +FL +   +  F  +L  Y+
Sbjct: 139 EWERRKFNIVRAPEISMCSQFLANPRILVFFSAVLALYI 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,761,149
Number of Sequences: 59808
Number of extensions: 441917
Number of successful extensions: 746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)